Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3524 206 3e-48 seq1952 156 5e-33 seq2878 87.8 2e-12 seq225 86.0 8e-12 >seq3524 Length=35516 Score = 206 bits (228), Expect = 3e-48 Identities = 596/904 (66%), Gaps = 25/904 (3%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 || ||||| || || |||||||||| ||| ||| ||| || |||| |||| || Sbjct 11153 GTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGG 11212 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| || || ||||||||| | ||||| || ||||| ||||||||| || Sbjct 11213 TTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGT 11272 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAG---CTGGCACAG-TGGCGTTGGCTCGCCC 118927 || | | | || ||| || | || | || | || | ||| | || ||| Sbjct 11273 GAGTCCAACACCGCAAACCA--CAGCTGCTGGGCCTTGATCACCTTGCGC-GCCTTGCCA 11329 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGG-GCTTCAAA--CTCTTCACCCACGGCCTCTGAGAG 118984 |||||| |||||| | || || |||| || |||| ||| ||| || | || Sbjct 11330 CTCTTC-TCGTACGTCTCATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCC---AG 11385 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || | |||||||| |||||||| | || | | ||| || |||| ||| Sbjct 11386 GCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCAT 11445 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCC 119102 ||| || || || ||||||| || |||| | || || || ||| | |||| Sbjct 11446 GAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGG--GCCCGCTCCAGCTCATTG 11503 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || || || |||| |||| || || | |||||| |||||||| || |||||||| Sbjct 11504 CCGTGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAG 11563 Query 119163 ACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 | |||| || ||||| || | ||| |||||| || || | || ||| |||| Sbjct 11564 ATGGCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTG 11623 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAG 119277 || ||||| ||||| || | ||| || | ||| || |||| || || || ||||| Sbjct 11624 AAGACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAG 11683 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 | | || | || | ||||| | |||||| || ||||| |||| ||||| Sbjct 11684 TC--ACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGG 11741 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 ||| || | | ||||| || | ||||| || ||||| ||||| |||| | | | | Sbjct 11742 CCGCACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAA 11801 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 |||||||| || | || |||| || || || ||||||||||| || || || |||| Sbjct 11802 GGAAGCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGT 11861 Query 119458 GGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517 | |||| | |||||||| | ||||||||| | | ||| | ||| ||| Sbjct 11862 GAGTGAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCT 11921 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 119577 || || || || | || ||||| | ||||| |||||| ||||| | ||| || | Sbjct 11922 TATGGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGT 11981 Query 119578 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGT 119637 | | | | | ||||| |||||||| ||||||| ||| |||||| || | ||| ||| Sbjct 11982 CCATCTTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGT 12041 Query 119638 CCCG 119641 | || Sbjct 12042 CTCG 12045 Score = 96.9 bits (106), Expect = 4e-15 Identities = 309/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 117863 ||||||| |||| ||| ||||||| | || ||||||||||| || |||||||| Sbjct 10188 TGAACTGGATGGCGTCG-GCCTTGGGGCGGGTGCGCAGGTAGTACATGCCGGTCTTGAGT 10246 Query 117864 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCA-- 117921 |||| |||||||| ||| | ||||| |||| | || || | | || ||| | ||| Sbjct 10247 CCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGATTGGCCAGG 10306 Query 117922 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAA 117981 |||| | || | |||||||| ||| || || || || |||||||| || | Sbjct 10307 TGAATA--TTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCGGCCGCCATGTCGA 10364 Query 117982 TCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 | || |||| | ||| |||||||| ||| | || || | || | ||| |||| Sbjct 10365 TGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTGAGCTCACGGGGGA 10424 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACC-ATGAGATCCTTCATATCCTTT 118100 | | | || || || | | | |||| | ||| |||| | || ||| Sbjct 10425 TG--CTTGCTACGTTC--TGCACCGAGCCGCGATTACCCATGATCTGGTTGCGGACCTCG 10480 Query 118101 GA---CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAAC 118157 | ||| || || || | || || | | || | ||| ||||| | ||| Sbjct 10481 GCATTCCAAAGGCCGCGCTCGATCAGGTCGCCGAGCAGGTACTTGTTGACGATGGTAAAT 10540 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 || ||||| || ||| | | ||| || |||| |||| | ||||| | | |||| ||| Sbjct 10541 TCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCTCCACGGACTCGTTG 10600 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGG 118268 || |||| ||||||||| |||||||| ||||||||||| |||| || ||| Sbjct 10601 TTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGG 10651 >seq1952 Length=85402 Score = 156 bits (172), Expect = 5e-33 Identities = 284/410 (69%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 ||||| || ||||| || || ||||| || | || |||| || | ||| || || Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 |||||||| | |||||| | | | || ||||| ||||||||||||| || ||||| Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 14183 ATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCACCCGCACTGCGTTGCTTACCGA 14240 | |||||| || || || || || ||| |||| | ||| |||| || || ||| | Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAACTTCAAAG 14299 | |||||||| || |||||||||| ||| || || | | ||| | | | ||||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC-TCAAAC 26784 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG---CGGCG 14356 || || ||||| | | ||||| |||||||||||||| ||||| || | || | || Sbjct 26785 ATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCAGCC 26844 Query 14357 GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 | || |||||||| ||| ||| |||||||| | ||| ||| || || |||||| Sbjct 26845 GCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTCTTC 26901 Query 14417 CCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || | || | |||| || |||||| ||||||| Sbjct 26902 CCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 >seq2878 Length=6153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||||| |||||||| |||||| |||| || || || ||| ||| || || Sbjct 6125 GGCATCAAACCCCTCTTCTTCAGCCAGAATATCGAGCAGAACGACCCACTGAAAAATATA 6066 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || |||||| ||| ||||||| || ||||| || || ||| | |||| || || Sbjct 6065 CCTTCCACAGCCGCAAACGCAATCAGGCGCTCGGCGAAAGAGGCGTACTTCCGGTCGCAC 6006 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||| | | |||||||||||||| || ||| || || || | || || | | | Sbjct 6005 CACCTGAGGGCCCACTGCGCCTTCCGACGGACACAAGGCACAGTATCAATGGCATTGAGG 5946 Query 130256 AGTTCCTTCTTTTC-TGATGGATCTTTGATGTACTTATCTATGAG 130299 || | | ||| || ||| | || ||||||||| | || ||||| Sbjct 5945 AGCTTGTGCTTCTCTTGACCGTTC-TTGATGTACGTGTCGATGAG 5902 >seq225 Length=49998 Score = 86.0 bits (94), Expect = 8e-12 Identities = 276/426 (65%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 14102 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCC 14161 ||||| | |||||| || || || || |||| | || | | | ||||| || ||| Sbjct 14845 ATATCTACGCGGTTTGTAGCTGCAATTACAATAACACCATTATTAGTTTCAAATCCGTCC 14904 Query 14162 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCC 14221 || || || ||||| ||||| | |||||||||||||| |||||| || | | || Sbjct 14905 ATTTCGGTTAAGAGCTGATTTAACGTTTGTTCGCGTTCGTCATTCCCACCACCAACTCCA 14964 Query 14222 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTT 14281 | | | ||| |||| || |||||||||||||| ||||| | ||||| ||| ||| Sbjct 14965 GAGCCTCTTTGTCTACCAACTGCGTCAATTTCATCAATGAAGATAATACAAGGTGTTTTT 15024 Query 14282 TCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCC 14341 | || | ||| | ||| || | ||| || || | ||| ||||| | ||| Sbjct 15025 GCTTTAGCTCGCTTAAAAAGATCACGAATTCTTGATGCTCCTATACCAACAAATAACTCT 15084 Query 14342 ACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGG 14401 ||||| | | ||||| || | ||||| || || | ||||| || || || Sbjct 15085 ACAAATTCTGATGCGGAGCAACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCTTA 15144 Query 14402 GCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTG 14461 || | | || || ||||| ||||| |||| | | |||| |||||| | Sbjct 15145 GCTAATAAAGTTTTACCCGTTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGATTTTA 15204 Query 14462 GCACCACTGCCAAAGTAGCGTTCAGG-TTGTTTAAGGAAGTCCACGATTTCTTCCAATTC 14520 |||||| | | || ||||| || || ||||| |||| || ||||||| || || Sbjct 15205 GCACCAACACGAGTATAACGTTCGGGTTTCTTTAAAAAAGT-AACAATTTCTTGAAACTC 15263 Query 14521 ATCCTT 14526 || || Sbjct 15264 TTCTTT 15269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618389969195560