Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3524 235 6e-57 seq1952 134 2e-26 seq4035 116 4e-21 seq225 109 6e-19 >seq3524 Length=35516 Score = 235 bits (260), Expect = 6e-57 Identities = 454/665 (68%), Gaps = 11/665 (2%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACG 104196 |||||| ||||| || ||||| ||| |||| || || |||||| ||| || |||| Sbjct 12044 GAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCCTACCTGCTCAA-- 11987 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | | || || || | ||||| || ||| ||||| |||||||||| ||||| || || Sbjct 11986 GATGGACGGCATCGTCATGGAGCGACCCCAGCACATGATCATGCGCGTAGCCATTGGAAT 11927 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| ||| | || | | | ||||| ||| | |||||||| | || Sbjct 11926 CCATAAGGAGGACGTGGACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTCTT 11867 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTG 104376 || |||||| || || || |||||||| || || || || | || || | ||| || Sbjct 11866 CACTCACGCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTG 11807 Query 104377 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 104436 ||||||| | ||| ||||||||||| ||| |||||||||||| ||||| | | | || Sbjct 11806 CTTCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAATG 11747 Query 104437 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 104496 |||| ||||| |||| || || || ||||| | |||||| | | | || Sbjct 11746 TGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAACATCCGGGCGCG 11687 Query 104497 TAAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 | | ||||| || || || |||| || || | || || | || ||||| || Sbjct 11686 TGA--CTCGTACATCCGTGGCTCAAACGGGACCTCCAACGGCATCGTGCCCATGCTGCGT 11629 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG---TCGAAAGGGATCTATC 104611 || || |||| ||| || ||||| || | || | |||| | || ||||| ||| || Sbjct 11628 GTCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTTC 11569 Query 104612 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 104671 || |||| || ||||| |||||||| |||||| | |||||||| || |||| ||| Sbjct 11568 GCCATCTACCTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAAC 11509 Query 104672 CAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 104731 || || | ||| || |||| |||||| | |||| ||| ||||||| || ||||| Sbjct 11508 CACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTG 11449 Query 104732 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCT 104791 |||||| || | || ||| | ||| | |||||||| || || || || || ||| Sbjct 11448 TTCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAACGAGTGCCCT 11389 Query 104792 GGTCT 104796 || || Sbjct 11388 GGCCT 11384 >seq1952 Length=85402 Score = 134 bits (148), Expect = 2e-26 Identities = 280/413 (68%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || ||||| ||||| ||||| || | ||| |||| || | | || || ||| Sbjct 26548 CGATCGAATCGACCAGGACGCAGGAGAGCCTGATCCAGGACGTCGGCTCTGTTGGTGGCG 26607 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||||||| | || || | | || || || |||||||| |||| ||| || || Sbjct 26608 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATCTCAGTCAGAAGCTGATTT 26667 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | ||||| || || || || || ||| |||| | |||||||| || || |||| Sbjct 26668 AAGGTTTGCTCACGCTCGTCGTTCCCGCCGGCAAA--ACCAGCACCACGCTGGCGACCCA 26725 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTCA 9757 | || |||||||| || ||||| | |||||| | ||| | || || || ||| Sbjct 26726 CAGCGTCAATCTCGTCGATGAAAATGATGCAAGGCGCGTTCTTCTTAGCCTGC----TCA 26781 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---CG 9814 || | || || |||||| || |||||||| |||||||| ||||| || | | | Sbjct 26782 AACATGTCACGCACACGCGACGCACCCACACCCACAAACATTTCCACGAATTCGGACCCA 26841 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | || |||||||| || ||| |||||||| | ||| ||| || || ||| Sbjct 26842 GCCGCCGAT---ATGAAGGGCACGCCAGACTCACCCGCCACGGCCTTGGCCAGCAGCGTC 26898 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || ||||| || ||| | |||| |||| || || |||||||| || Sbjct 26899 TTCCCTGTACCGGGAGGACCATCAAGGATCACACCGCGGGGGATCTTGGCACC 26951 >seq4035 Length=10978 Score = 116 bits (128), Expect = 4e-21 Identities = 356/547 (65%), Gaps = 5/547 (1%) Strand=Plus/Minus Query 104543 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGA 104599 || ||||| || || ||| ||| || || || ||||| |||| | || | ||| Sbjct 7718 CCCATGCTGCGTGTGTTTGACGTGACTGCTCGGTATGTCGATCAGGGGGGAGGGAAGCGA 7659 Query 104600 AAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 104659 |||| | | || | || ||||||| ||||| ||||||||| | ||| | ||||| Sbjct 7658 CCGGGAGCATTTGCTATTTACATTGAGCCTTGGCATGCGGATATCTTCGAGGTGCTTGAC 7599 Query 104660 TTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 104719 || | ||||| || | || || || ||| ||||| ||||| | || || ||| Sbjct 7598 TTAAGGAAGAACCATGGGAAGGAAGAAGCCCGGGCGCGCGACCTCTTTTACGGGCTTTGG 7539 Query 104720 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCA 104779 ||||| ||| | || ||||||||||| ||||| ||| | |||||| || | ||||| Sbjct 7538 ATTCCCGATTTGTTTATGAAGAGAGTGGAGGAAGATGGGATTTGGTCACTGATGTGTCCT 7479 Query 104780 GACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAA 104838 || || ||||| | ||| || | | || | |||||||| | ||| || | Sbjct 7478 GATCAGTGTCCTGGCTTGGGCGACTGTCAT-GGCAAAGAGTTTGAGGTCCTGTATCTGCA 7420 Query 104839 GTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTAT 104898 ||||| ||| || | | ||| |||| || || ||||| || || Sbjct 7419 ATACGAAAAAGCTGGGAAAGTAAAAAAGACAGTGCGTGCGCAAGACCTGTGGTTCGCCAT 7360 Query 104899 TCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCA 104958 || | || || | ||| || || || || || ||||| | ||||||||| ||||| | Sbjct 7359 CCTGGACTCACAGATCGAAACGGGCACGCCTTATATGCTCTTCAAAGACGCGTGTAATCT 7300 Query 104959 AAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTT 105018 ||||| ||||| | ||||| || ||| || || || | || || || || | Sbjct 7299 TAAGAGCAATCAGCAAAATTTAGGGACGATTCGAAGCTCGAACTTGTGCACGGAGATTAT 7240 Query 105019 GGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAA 105078 | | ||| | || ||| ||||||||||||| | || || |||| ||| ||||| Sbjct 7239 CCAGTATACGAGCCCCGAGGAGGTGGCTGTGTGTAACTTGGCCTCGATCGTTCTGCCCAA 7180 Query 105079 GTATGTG 105085 | |||| Sbjct 7179 ATTTGTG 7173 >seq225 Length=49998 Score = 109 bits (120), Expect = 6e-19 Identities = 296/451 (66%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 9563 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9622 ||||| ||||| || || || || || |||| || ||| | | | | ||||| || ||| Sbjct 14845 ATATCTACGCGGTTTGTAGCTGCAATTACAATAACACCATTATTAGTTTCAAATCCGTCC 14904 Query 9623 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA 9682 || || || || || || || | |||||||| ||||| |||||| | | | ||| Sbjct 14905 ATTTCGGTTAAGAGCTGATTTAACGTTTGTTCGCGTTCGTCATTCCCACCACCAACTCCA 14964 Query 9683 GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT 9742 | | | ||| | || || || ||||| ||||||||||||| || || ||| ||| Sbjct 14965 GAGCCTCTTTGTCTACCAACTGCGTCAATTTCATCAATGAAGATAATACAAGGTGTTTTT 15024 Query 9743 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCT 9800 | ||| | ||| ||||| || | |||| || || | ||||||||| | || Sbjct 15025 GCTTTAGCTCGCTTAAAAAGATCACG--AATTCTTGATGCTCCTATACCAACAAATAACT 15082 Query 9801 CCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTC 9860 | ||||| | || ||||| || | ||||| || || | ||||| ||||| || Sbjct 15083 CTACAAATTCTGATGCGGAGCAACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCT 15142 Query 9861 GGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCT 9920 || | | ||| |||||||| ||||| || | | | ||||| ||| || | Sbjct 15143 TAGCTAATAAAGTTTTACCCGTTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGATTT 15202 Query 9921 TGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATT 9980 | || ||| | | || | || |||| ||| | |||| |||||||||| || | Sbjct 15203 TAGCACCAACACGAGTATAACGTTCGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAACT 15262 Query 9981 CATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | ||||| | | ||||| || ||||||| Sbjct 15263 CTTCTTTAACTTCATCAATACCAGCAACATC 15293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218141763240