Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq225 196 1e-44 seq159 102 2e-16 >seq225 Length=49998 Score = 196 bits (216), Expect = 1e-44 Identities = 227/303 (75%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || |||| |||||| ||||| | || |||||||| || || || |||||||| ||| | Sbjct 35254 ATTTTTAAATGAAACGGTAACAAAAGCAGTTATTACAGTGCCTGCATATTTTAACGATTC 35313 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 ||||| || || ||||| ||||| | |||||||| ||| | ||| || | || || Sbjct 35314 TCAGCGACAAGCGACGAAAGACGCTGGTAAGATTGCGGGTTTAGAAGTTTTACGTATTAT 35373 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 ||||||||| || || |||||| |||| ||||| | || |||| || | || ||| Sbjct 35374 TAATGAACCAACAGCAGCAGCACTTGCTTATGGTTTAGACAAAA-AAG---CAAATGAAA 35429 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| | || |||||||||||||||||||| |||||||| ||| | || | ||| Sbjct 35430 CGATAT--TAATCTTTGATTTAGGTGGTGGTACATTTGATGTTTCAATTTTAGAAGTTGG 35487 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||| || | |||||||| ||||||||||||||||| ||| | |||||||| ||||| Sbjct 35488 AGATGGTGTATTTGAAGTATTAGCAACTGCTGGTGATAGTCATTTAGGTGGAGATGATTT 35547 Query 349885 TGA 349887 ||| Sbjct 35548 TGA 35550 Score = 118 bits (130), Expect = 3e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 |||||||| || ||||||||||| |||| |||||||| ||| |||||||||| || Sbjct 35550 TCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCAAATACACCA 35491 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||| ||| | ||||||||| |||||||||||||||||||| |||||||| Sbjct 35490 TCTCCAACTTCTAAAATTGAAACATCAAATGTACCACCACCTAAATCAAA 35441 >seq159 Length=12779 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || | || ||||| || ||||| || || || || | || || || || Sbjct 10490 AGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCC 10549 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || || ||||||||||| || || ||||| || ||| Sbjct 10550 TCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCC 10609 Query 140646 TGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || ||| || || ||||| || || | || || ||||| || || || | || Sbjct 10610 TGGATCTTTTGC-TTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGT 10668 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || || || || |||||||| Sbjct 10669 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 10701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515140807533353