Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3524 315 8e-81 seq4332 84.2 2e-11 >seq3524 Length=35516 Score = 315 bits (348), Expect = 8e-81 Identities = 538/771 (70%), Gaps = 16/771 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 |||||||||| ||| | || ||||| || ||| | ||||| | |||||| ||| Sbjct 11948 TCATGCGCGTAGCCATTGGAATCCATAAGGAGGACGTGGACGCG-GCGATTGAGACCTAC 11890 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | | ||| ||| ||| ||| || ||||||||||| || || |||||||| || ||| Sbjct 11889 AATCTCATGTCCCAGAAGCTCTTCACTCACGCCACGCCTACACTCTTCAACGCCGGCACG 11830 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || ||| | || ||||||||| || | |||||||| ||||| |||||||| Sbjct 11829 CCGCGGCCGCAGCTCTCCTCCTGCTTCCTTCTGACCATGAAGGAGGACTCCATCGACGGT 11770 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || || |||||| | ||||| ||||||||||| | ||||| || ||| || Sbjct 11769 ATCTATGACACTCTCAAGCAATGTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTC 11710 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | ||| |||| ||| | | | ||| || | ||||| | || | Sbjct 11709 TCGATCCATAACATCCGGGCGCGTGACTCGTACATCCGTGGCTCAAACGGGACCTCCAAC 11650 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||| || ||||||||| |||||||||| ||||| |||||||||| Sbjct 11649 GGCATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGGG 11590 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || ||||||||||| || |||||||||||||| ||||| ||||||||||| || | ||| Sbjct 11589 GGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGGCACGCCGATATCTTCGAG 11530 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || || || ||||| ||| || || | || | ||| ||| ||| |||| ||| Sbjct 11529 TTCCTGGATCTGCGCAAGAACCACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTAC 11470 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || |||| || || || |||||||| |||||||| |||| || |||| || Sbjct 11469 -GCCCTCTGGACGCCTGATCTGTTCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCT 11411 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 | | ||||| ||||||||||| ||||| || || | || ||||| ||||| || | Sbjct 11410 GTTCTGCCCCAACGAGTGCCCTGGCCTGGCGGACGTATGTGGAGAGGAATTTAAGCAGCT 11351 Query 53791 GTATCGGACGTACG----CAGT-TCAGGGC-CGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 |||| |||||||| ||| || ||| ||| | || |||| | || || || Sbjct 11350 GTATGAGACGTACGAGAAGAGTGGCAAGGCGCGCAAGGTGATCAAGGCCCAGCAGC-TGT 11292 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 ||| || | || |||| |||||||||||||| ||||| || ||| || ||| Sbjct 11291 GGTTTGCGGTGTTGGACTCA-----CAGGTGGAGACGGGCACGCCCTATATGCTCTTCAA 11237 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||| | ||| ||| |||||| |||| | || || ||||| || Sbjct 11236 GGATGCCTGCAATCTCAAGTCGAACCAGCAGAATCTGGGAGTTATCAAGTC 11186 Score = 215 bits (238), Expect = 6e-51 Identities = 552/829 (67%), Gaps = 26/829 (3%) Strand=Plus/Minus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGC- 55185 || ||||| || ||||| ||||| || ||||||| || | ||||| |||| ||| Sbjct 11025 GTGGTGACGCGCAACCTCAACCGTGTTATCGACATCAACTTTTACCCCGTGGAAGAGGCT 10966 Query 55186 --GCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGAC 55243 |||| |||||| | ||||| ||||| ||| |||||| || ||||||||||| || Sbjct 10965 AAGCGC---TCCAACATGCGGCATAGGCCCGTCGGCATCGGCGTGCAGGGCTTGGCGGAT 10909 Query 55244 ATCTTCATGATGCTCGGATTGCCCTTCGACTCGGAA--CCTGCTCGAGAAATTAACCAGG 55301 ||||| | | | | |||||||| |||| | | |||| || | || ||| Sbjct 10908 GCGTTCATCAAAATGCGCTACCCCTTCGAGTCGGCAGACGCGCTCCAGC--TGAATAAGG 10851 Query 55302 ACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGC 55360 || ||||| || | ||| ||||| | || |||| | || | | || |||| Sbjct 10850 ACGTCTTCGAGAC-CATGTACTTCGGCGCCGTCGAAGCCTCCATGGAAATCGCAATGAAG 10792 Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCC-AGCTGACAAGGGACTTCTCCAGTTCGA 55419 ||||| | |||||||| ||| | |||||| | | | |||||| | |||||||||| Sbjct 10791 GAGGGCCCGTACGAGACCTTCTCCGGTTCGCCCATCAG-CAAGGGCGTCTTCCAGTTCGA 10733 Query 55420 TCTATGGGGCAAGTCTGACCCCATG--------TTTGACAAGTTGAAGCATGACATTC-A 55470 | |||||| | | | ||| | || | | | || | | | || | Sbjct 10732 CATGTGGGGCGTGACCCCCTCCACGCGCTGGGATTGGGCCGGCCTGCGCGTCAAAGTCCA 10673 Query 55471 CTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCA 55530 | ||| | ||||| |||||||| ||||||| ||||| ||||| || ||||| || Sbjct 10672 GGAGCATGGCGTGCGCAATTCCCTGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCCCA 10613 Query 55531 GATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGAC 55590 ||| |||||||||||||| | | ||||| | |||| ||||||| || |||||| Sbjct 10612 AATCCTGGGCAACAACGAGTCCGTGGAGCCCTTCACGTCCAACATGTATTCGCGCCGCGT 10553 Query 55591 CCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAA 55650 || || || || ||| ||| |||||||| |||| || |||||| || | Sbjct 10552 GCTGGCGGGCGAATTTACCATCGTCAACAAGTACCTGCTCGGCGACCTGATCGAGCGCGG 10493 Query 55651 CAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCT 55710 | ||||| | || || | | || || | || | || || || ||||| | Sbjct 10492 CCTTTGGAATGCCGAGGTCCGCAACCAGATCATGGGTAATCGCGGCTCGGTGCAGAACGT 10433 Query 55711 GG--AGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAA 55767 | || ||| | | | ||||| ||| | || ||| ||||||||||| | ||||| Sbjct 10432 AGCAAGCATCCCCCGTGAGCTCAAAGAGCTATATAAGACCGTGTGGGAGATCCGGCAGAA 10373 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 | | | || |||||| || || || || || ||||| ||| |||||||| || || Sbjct 10372 GTGCGTCATCGACATGGCGGCCGACCGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAA 10313 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 || | ||| ||||| | | ||| || | | ||| ||||||||||| ||||| Sbjct 10312 TATTCACCTGGCCAATCCCACGCCCGCCCAGCTCACCTCCATGCACTTTTATTCCTGGAA 10253 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCC 55936 ||||||||||||||| || |||||||| ||||| |||||| |||||||| Sbjct 10252 GAAGGGACTCAAGACCGGCATGTACTACCTGCGCACCCGCCCCAAGGCC 10204 >seq4332 Length=45634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 117398 CCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGA 117457 |||||||| |||||||||| |||||||| || | | | |||||| ||||||||| Sbjct 28305 CCCACAAAATTTTGAGCCATTCCTACAATCGTCCCGTTTAAGGACGCCTCCCCATGGTGA 28246 Query 117458 TACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGG 117517 || || | || || | ||| || || || ||||| || || || || || ||| | Sbjct 28245 TAGGCGGAATGTTCAGACACATATCCAGCGAGCTGCGCGACTTTGATCTCCTTTTTCAAG 28186 Query 117518 TTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 || || | ||| || | | ||| || ||||| ||||| | ||| ||| || | Sbjct 28185 CTCCGTTTAAAGCACGCGAACAGCACTTTCCGCTGGGCCGGCTTTAAACCGTCCATCAAG 28126 Query 117578 TGAGGGATCGAACGCT 117593 ||||||||||| |||| Sbjct 28125 TGAGGGATCGACCGCT 28110 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || ||||| || || |||| || ||| ||| |||||||||||| | | || | ||| Sbjct 27501 GCCTCCCGGACATTCAGCGGTTTCCCCTTCAGAGGAAACACGCCATAGTAATCCCTCCCC 27442 Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291 || ||||||||||| | |||||| | | ||| ||||| || ||||| || | ||| | Sbjct 27441 ACCACGCTCAAGCCCGAAATAGCCAACGTCTTAGCCGAATCTCCCTCCGTCAAAATCAAG 27382 Query 118292 GTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 || || || | ||| || || || |||| |||||||||| ||| Sbjct 27381 GTACAGTCCGACGAGCGCGCCGTGCCCGCAAAATTCGCATCATCCAACTT 27332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175977989800