Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3272 190 2e-43 >seq3272 Length=24018 Score = 190 bits (210), Expect = 2e-43 Identities = 396/586 (68%), Gaps = 14/586 (2%) Strand=Plus/Minus Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941 || |||| || | ||| |||||||| || || | |||| || ||||| || || | Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 | ||| || || |||| || | ||||| | | || || || ||||| || Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | ||||| ||| | | ||||| | ||| || || ||||| || | | Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCC 18669 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30121 || ||||||||||| | ||| ||||| || | ||||| |||| || || Sbjct 18668 ACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGA 18609 Query 30122 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30181 |||||||| | || ||||| || | ||||| || || ||| | || || | || Sbjct 18608 TTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCA 18549 Query 30182 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30241 ||| ||||||||| | ||| |||| | |||||| || ||| ||| |||| || || Sbjct 18548 TTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCC 18489 Query 30242 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTC 30300 || ||||||| ||||||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 18488 CCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC 18429 Query 30301 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA------GATCTTTAC 30354 || || | ||||||| | || ||| | ||| ||||||| |||||| Sbjct 18428 -AACCCTATTTTGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTT 18370 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 | ||| | ||| || |||||||| || || || |||||||||| |||||| Sbjct 18369 GTCTTTC-AATAGA-----TTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTC 18316 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 | |||| || |||||| |||||||| ||||| | ||| |||||| Sbjct 18315 CGCGACCCCCCGCCAAAATACCCTCTTAGTCGTTAAGAGAGGAAAC 18270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281426386292