Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq3272 190 2e-43
>seq3272
Length=24018
Score = 190 bits (210), Expect = 2e-43
Identities = 396/586 (68%), Gaps = 14/586 (2%)
Strand=Plus/Minus
Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941
|| |||| || | ||| |||||||| || || | |||| || ||||| || || |
Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
| ||| || || |||| || | ||||| | | || || || ||||| ||
Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || | ||||| ||| | | ||||| | ||| || || ||||| || | |
Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCC 18669
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30121
|| ||||||||||| | ||| ||||| || | ||||| |||| || ||
Sbjct 18668 ACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGA 18609
Query 30122 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30181
|||||||| | || ||||| || | ||||| || || ||| | || || | ||
Sbjct 18608 TTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCA 18549
Query 30182 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30241
||| ||||||||| | ||| |||| | |||||| || ||| ||| |||| || ||
Sbjct 18548 TTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCC 18489
Query 30242 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTC 30300
|| ||||||| ||||||||| |||||||||||||| ||||||||||| |||| |||||
Sbjct 18488 CCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC 18429
Query 30301 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA------GATCTTTAC 30354
|| || | ||||||| | || ||| | ||| ||||||| ||||||
Sbjct 18428 -AACCCTATTTTGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTT 18370
Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414
| ||| | ||| || |||||||| || || || |||||||||| ||||||
Sbjct 18369 GTCTTTC-AATAGA-----TTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTC 18316
Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460
| |||| || |||||| |||||||| ||||| | ||| ||||||
Sbjct 18315 CGCGACCCCCCGCCAAAATACCCTCTTAGTCGTTAAGAGAGGAAAC 18270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406281426386292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |