Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2518 120 2e-22
seq35 87.8 1e-12
>seq2518
Length=13831
Score = 120 bits (132), Expect = 2e-22
Identities = 168/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||||||||||||||| || || |||||| || |||||||| ||||
Sbjct 5330 CGCCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTG 5271
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || ||| |||| || ||||| || || || || || | ||||| || ||||| |
Sbjct 5270 ACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAG 5211
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| ||||||||| || ||| | || ||||| | ||||
Sbjct 5210 GGATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTGTCGCTGGGCTCC 5152
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | ||| || || ||||| || | || || || || || ||||| ||
Sbjct 5151 ACATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTT 5099
>seq35
Length=30318
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 12428 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12487
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 12488 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12547
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | |||||| |||| ||
Sbjct 12548 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGT 12606
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 12607 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12646
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 10832 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 10891
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 10892 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 10951
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 10952 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 11010
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 11011 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11050
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 11060 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11119
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 11120 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11179
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 11180 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 11238
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 11239 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11278
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 11288 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11347
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 11348 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11407
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 11408 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 11466
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 11467 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11506
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 11516 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11575
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 11576 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11635
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 11636 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 11694
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 11695 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11734
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 11744 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 11803
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 11804 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 11863
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 11864 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 11922
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 11923 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11962
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 11972 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12031
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 12032 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12091
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 12092 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 12150
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 12151 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12190
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 12200 AGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGG 12259
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || || || || | ||||| ||||| || || | ||||||
Sbjct 12260 CCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 12319
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| || || ||| | || ||||| | ||| || |||| ||
Sbjct 12320 TTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGT 12378
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || || ||||||
Sbjct 12379 GATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314707156927283
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