Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq159 127 2e-24 seq5413 96.9 3e-15 >seq159 Length=12779 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || || ||||| |||||| | || || || || || || || Sbjct 10704 GCCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCC 10645 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| | || |||| || || ||||| || || ||||| ||||| || || || ||| Sbjct 10644 AGCGACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGAT 10585 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | || ||||| || |||| ||| | || |||| || ||| Sbjct 10584 CAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTAC 10525 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| |||||||| || || || ||||| |||| |||| || || Sbjct 10524 AACATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGG 10475 >seq5413 Length=43850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 || || |||| | | |||||||| | |||| |||||| || ||| || ||||||||| Sbjct 42898 ACTCACGACCAGCTCTGGAACGCCTCTCAACTCCAGCTTGTGCAAGAGGGGAAAATGCAC 42957 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCC 135573 ||||| | |||||||| ||||| ||||| || ||||||||| | |||||||| Sbjct 42958 GGATTCCTTCGCATGTACTGGGCCAAAAAAATCTTGGAATGGACGGCATCGCC 43010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886591155520