Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq5733 668 0.0 >seq5733 Length=57551 Score = 668 bits (740), Expect = 0.0 Identities = 745/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| |||| | ||| | ||| | | ||| | |||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||||| | ||||| ||| | | || ||| || || || ||| | || || || Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 |||||||| || || |||||||| ||||| || |||||||| || ||||| || | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 ||||||||||| ||| |||| ||||| | || || || ||||| || || | |||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||| | |||||||| || | || ||||| ||||| ||||| || || || |||||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAA 176460 || || ||||| |||||| | | ||| | ||||| |||||||||| |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGT---AGCTTGCTACATGGGACGTGAATGGGAA 41509 Query 176461 CTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 176520 ||||| ||| | |||| |||||||||||||| | || || | ||| || |||||| || Sbjct 41508 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 41449 Query 176521 GCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATG 176580 ||||| ||||| ||| | || || ||| | || ||||| ||||||||||||||| Sbjct 41448 GCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATG 41389 Query 176581 CCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATT 176640 ||| | || ||||| ||||| |||||||| ||||| |||||||||||||| ||||||||| Sbjct 41388 CCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 41329 Query 176641 CTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCA 176700 || |||||||||||||||||| ||| || || |||||||||||||||||| | ||| Sbjct 41328 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 41269 Query 176701 GCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAA---CGAA 176757 || |||||||| |||||| || ||| | | | || ||| ||| | || | Sbjct 41268 GCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTA 41212 Query 176758 TCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 || |||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 41211 TCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCA 41152 Query 176818 CACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT 176877 |||||||||||||| ||| | |||||||| || || |||||| |||||| | | | Sbjct 41151 CACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTA 41092 Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 ||||||||| | || |||| |||||||| | |||||||| ||||| | |||||| | Sbjct 41091 CACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGT 41032 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 || |||||||| ||| | |||||||||||||||||||| || || | || | ||| Sbjct 41031 ACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGT 40972 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 ||||| || |||| || || | |||||||| | | ||||||||||| ||| Sbjct 40971 CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 40912 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 ||||| ||||| || ||||||||||| || || Sbjct 40911 CACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603450261928320