Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3272 167 2e-36 >seq3272 Length=24018 Score = 167 bits (184), Expect = 2e-36 Identities = 388/574 (68%), Gaps = 12/574 (2%) Strand=Plus/Plus Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 |||||||||||| ||| | || ||||| ||||| ||||||||| | || |||||||| || Sbjct 18435 TCGGGAGGAGGGAGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTTGGGGCTGA 18494 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 || || | | |||||||| | || |||| || |||||| | | || Sbjct 18495 ATACAAGGATATGCACGCGGACTACACCGGGAAGGGCATCGATCAGCTGGCAAATGCAAT 18554 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || || | ||| || || || || || ||||| | | | || ||||| || Sbjct 18555 TGAGACGATAAAGAAAAATCCGGAAGATCGACGGATCATTGTCTCAGCCTGGAATCCTTC 18614 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA 34623 |||||| ||||||| | |||||||| |||| | || || || || || || || Sbjct 18615 GGATCTGGGGAAGATGGCGTTGCCCCCGTGTCACATGTTTTGTCAGTTTTATGTGGCAAA 18674 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACG-ATCGGGAGACATGGGGTTAGGGGTGCCGT 34682 ||||||||||||||||||| | || ||||| | || | || ||||| || || ||||||| Sbjct 18675 TGGGGAGCTGTCCTGCCAGATGTACCAACGCAGCGCG-GATATGGGTTTGGGTGTGCCGT 18733 Query 34683 TCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTT 34741 | || |||||| || || ||||||| | || | || || || ||| ||||||| Sbjct 18734 TTAATATTGCTTCGTATGCATTGCTCACCAGCTTGGTGGCGCAGGT-GTGTGGGTTGGCG 18792 Query 34742 CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGG 34801 || |||||| | ||||| || | |||||||| || | ||| ||| ||| ||||| | Sbjct 18793 CCAGGGGAGTTCGTGCACACAATTGGGGATGCTCACGTTTACTCGAATCACGTCGAG-GC 18851 Query 34802 CT--CCGGATCCAGCTGCAACGAGAGCCCCGACC--GTTCCCCCAGCTCAAAATTATTCG 34857 || ||| ||| || ||| || ||||| || ||| || | |||| |||| | Sbjct 18852 CTTGAAGGA-GCAGTTG--ACGCGAACCCCGGCCAAGTTTCCTCGGCTCTTCATTAACCC 18908 Query 34858 AGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCC 34917 | | | | ||||| |||||| | ||||| || | | || |||||| ||| Sbjct 18909 GGACAAGAAATGCATCGACGACTTTGTGTTTGAGGATTTTCGGATTGAGGGGTACACGCC 18968 Query 34918 GCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAG 34951 ||| | | | || ||| || ||||||||||| Sbjct 18969 GCAGGAGAACATCAAAATGAAGATGGCGGTGTAG 19002 Score = 167 bits (184), Expect = 2e-36 Identities = 388/574 (68%), Gaps = 12/574 (2%) Strand=Plus/Minus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 ||||||||||| || ||| || | | | |||||| |||||| || | | || || Sbjct 19002 CTACACCGCCATCTTCATTTTGATGTTCTCCTGCGGCGTGTACCCCTCAATCCGAAAATC 18943 Query 6454 CTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAAC-- 6511 ||| | |||||| ||||| | | | | | |||| |||| | || ||| Sbjct 18942 CTCAAACACAAAGTCGTCGATGCATTTCTTGTCCGGGTTAATGAAGAGCCGAGGAAACTT 18883 Query 6512 GGTCGGGGCTCTCGTTGCAGCTGGATCCGG--AGCCGCTCGATGTGGTTCAGGTAGATAT 6569 || ||||| || ||| || ||| ||| || | ||||| ||| ||| ||| | | Sbjct 18882 GGCCGGGGTTCGCGT--CAACTGC-TCCTTCAAGGC-CTCGACGTGATTCGAGTAAACGT 18827 Query 6570 GCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGAGCGATC 6628 | |||||||| | || ||||| | |||||| || ||||||| ||| || || || | | Sbjct 18826 GAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCCAACCCACAC-ACCTGCGCCACC 18768 Query 6629 ATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCC 6688 | | ||||||| || || |||||| || |||||||| || || ||||| || | | Sbjct 18767 AAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGCACACCCAAACCCATATC-CGC 18709 Query 6689 GAT-CGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGT 6747 | | ||||| || | ||||||||||||||||||||| || || || || || || | | Sbjct 18708 GCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCCACATAAAACTGACAAAACAT 18649 Query 6748 GTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGAT 6807 ||| |||||||| | ||||||| |||||| || ||||| || | | | ||| Sbjct 18648 GTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGATTCCAGGCTGAGACAATGAT 18589 Query 6808 CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCC 6867 || || || || || || ||| | || || || | | |||||| || || Sbjct 18588 CCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCATTTGCCAGCTGATCGATGCC 18529 Query 6868 CTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAA 6927 || || | |||||||| | | || || || |||||||| || | ||||||||| Sbjct 18528 CTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCCCCAAAATGCCGCCACTGGAA 18469 Query 6928 CCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 ||||| ||||| || | ||| |||||||||||| Sbjct 18468 GCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGA 18435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448229615208720