Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3272 116 3e-21 >seq3272 Length=24018 Score = 116 bits (128), Expect = 3e-21 Identities = 277/416 (67%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 118465 TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCA 118524 |||| | ||| | ||||||| || || ||||||||||||||||| || | ||| || Sbjct 18857 TTCAAGGCCTCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCC 18798 Query 118525 CCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACA 118584 || || | | ||| || || || | || | || | ||| || || | | Sbjct 18797 CCTGGCGCCAACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATA 18738 Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||||| |||||| || || | ||||||| ||||| || |||||| Sbjct 18737 TTAAACGGCACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCC 18678 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||| ||||||||||||| | |||||||| || |||| |||| | ||| Sbjct 18677 CCATTTGCCACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGA 18618 Query 118705 TGGGCAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCC 118764 | | |||||||||||||| | || || || | || | | || ||| | Sbjct 18617 TCCGAAGGATTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTC 18558 Query 118765 TCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCAT-CCTTT 118823 |||||| ||| | |||||| | ||||| || || || | | | |||| | || Sbjct 18557 TCAATTGCATTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCG-CGTGCATATCCTT 18499 Query 118824 ATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCT 118879 ||||| ||||||||| | ||| || || || || || || || || ||||||| Sbjct 18498 GTATTCAGCCCCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCT 18443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414447244047964