Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq159 167 5e-36 seq2518 156 1e-32 seq35 149 1e-30 seq4787 127 5e-24 >seq159 Length=12779 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||||||| || || ||||| || |||| ||| || | || || Sbjct 10490 AGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCC 10549 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || || ||||| || | |||||||||||| Sbjct 10550 TCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCC 10609 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| ||||| || ||||| ||||| | ||||| || || ||||| ||| Sbjct 10610 TGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTC 10669 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 10670 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 10701 >seq2518 Length=13831 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || ||||||||||| || | || || | || || ||||| ||| Sbjct 5304 TGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCCTCCAGTTGC 5245 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| ||||| || || || ||||| | || |||||||||||||||||| Sbjct 5244 TTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTT 5185 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| ||||||||||| | || || ||||| ||||| ||||| ||||| Sbjct 5184 TGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTCTTACCCGTC 5125 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | ||||| || Sbjct 5124 AGGGTCTTGACGAAGATTTGCATCTT 5099 >seq35 Length=30318 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 10838 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 10897 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 10898 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 10957 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 10958 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 11017 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 11018 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 11066 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 11125 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 11126 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 11185 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 11186 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 11245 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 11246 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 11294 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 11353 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 11354 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 11413 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 11414 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 11473 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 11474 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 11522 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 11581 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 11582 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 11641 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 11642 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 11701 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 11702 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 11750 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 11809 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 11810 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 11869 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 11870 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 11929 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 11930 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 11978 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 12037 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 12038 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 12097 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 12098 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 12157 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 12158 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 12206 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 12265 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 12266 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 12325 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 12326 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTC 12385 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 12386 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 12434 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 12493 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 12494 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 12553 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 12554 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGTC 12613 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 12614 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 138 bits (152), Expect = 3e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||| || | ||||| Sbjct 12662 AGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCC 12721 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 12722 TCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 12781 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||| ||||| | || || || || ||||| ||| Sbjct 12782 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGTC 12841 Query 211083 TTTCCC 211088 || ||| Sbjct 12842 TTGCCC 12847 >seq4787 Length=11161 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||||||| || |||||||| || || |||||||| || | || ||| Sbjct 6625 CCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCC 6566 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| |||||||| |||||||| ||||| ||||| | || || ||||| || Sbjct 6565 TTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTA 6506 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| || || | ||||| Sbjct 6505 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 6468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159065103083615