Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq159 122 6e-23 >seq159 Length=12779 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || ||||| ||| Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || ||||| ||||| | || || ||||| Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACA 23788 ||||| | || ||||| ||||| || ||||| |||| ||||| ||| || | |||| Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGG--ACTACA 10524 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||||| || | ||| | | ||||||| ||| Sbjct 10523 ACATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGA 10474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985496852308