Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3272 156 3e-33 >seq3272 Length=24018 Score = 156 bits (172), Expect = 3e-33 Identities = 415/635 (65%), Gaps = 23/635 (4%) Strand=Plus/Minus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||| ||||||||||| || | ||||| || ||||| || || | | ||| || || Sbjct 18834 GTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCCAACCCACACACCTG 18775 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 |||| || | ||||| | | || || || ||||| ||||| || | ||||| Sbjct 18774 CGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGCACACCCAAACCCAT 18715 Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC- 29846 ||| | | ||||| | |||||| || ||||| || | ||| |||||||||| Sbjct 18714 ATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCCACATAAAACTGACA 18655 Query 29847 --ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACA 29904 ||||| || ||||| || | ||||| |||| || || |||||||| | Sbjct 18654 AAACATG---TGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGATTCCAGGCTGA 18598 Query 29905 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 29964 || ||||| || | ||||| || || ||| | || || | || ||| |||||| Sbjct 18597 GACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCATTTGCCAGCTG 18538 Query 29965 ATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCT 30024 ||| | ||| |||| | |||||| | | ||||||| Sbjct 18537 ATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCCCCAAAATGCCG 18478 Query 30025 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTCGAAGCCCCTCT 30083 ||||||||| |||||||||||||| ||||||||||| |||| ||||| || || | | Sbjct 18477 CCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC-AACCCTATTT 18419 Query 30084 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30143 |||||| | || ||| | ||| ||||||| || | | || || | Sbjct 18418 TGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTTGTCTTTCAATA 18359 Query 30144 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 || |||||||| || || || |||||||||| ||||||| |||| || ||||| Sbjct 18358 GATTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGACCCCCCGCCAAA 18299 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCTTGAGGCCGTACCTCG--CCT 30257 | |||||||| ||||| | ||| |||||| ||| || |||||| || ||| || Sbjct 18298 ATACCCTCTTAGTCGTTAAGAGAGGAAACACATTGTTCC-TGAGGC--TAAATCGAAGCT 18242 Query 30258 GAGACCCAAACATGGACAAGACTCCCGTGCCTGTC 30292 | | |||||| |||||||| ||||||||| Sbjct 18241 GTGCTCCAAACTTGGACAAG------GTGCCTGTC 18213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134236882986