Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3272 187 2e-42 >seq3272 Length=24018 Score = 187 bits (206), Expect = 2e-42 Identities = 391/580 (67%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207 || ||||||| | ||| |||||||| || || | ||||| || ||||| || || | Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 | ||| || || |||| || | ||||| | | || || || ||||| || Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || | ||||| ||| | | ||||| | ||| || || ||||| |||| Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCC 18669 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 27387 || ||||||||||| | ||| ||||| || | ||||| |||| || || Sbjct 18668 ACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGA 18609 Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447 |||||||| | || ||||| || | ||||| || || ||| | || || | || Sbjct 18608 TTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCA 18549 Query 27448 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCT 27507 ||| ||||||||| | ||| |||| | |||||| | ||| ||| |||| || || Sbjct 18548 TTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCC 18489 Query 27508 CCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTC 27566 || ||||||| ||| ||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 18488 CCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTC 18429 Query 27567 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626 || || | ||||||| | || ||| | ||| ||||||| || | | || Sbjct 18428 -AACCCTATTTTGTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTT 18370 Query 27627 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 27686 || | || |||||||| || || || |||||||||| ||||||| |||| Sbjct 18369 GTCTTTCAATAGATTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGAC 18310 Query 27687 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 || |||||| |||||||| ||||| | ||| |||||| Sbjct 18309 CCCCCGCCAAAATACCCTCTTAGTCGTTAAGAGAGGAAAC 18270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480850787981