Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4035 122 1e-22 >seq4035 Length=10978 Score = 122 bits (134), Expect = 1e-22 Identities = 598/941 (64%), Gaps = 8/941 (1%) Strand=Plus/Plus Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 || ||||| || || | | || || || | ||||| || || ||||| | | | | Sbjct 7171 ATCACAAATTTGGGCAGAACGATCGAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTC 7230 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGA-TAGTGCCCAGATTTTGTTG 77779 | ||| || || ||||| || || | || | | || || | || || | |||||| || Sbjct 7231 GTATACTGGATAATCTCCGTGCACAAGTT-CGAGCTTCGAATCGTCCCTAAATTTTGCTG 7289 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 |||||||| ||| || | ||| || | || ||| | || || || ||||| ||||| Sbjct 7290 ATTGCTCTTAAGATTACACGCGTCTTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTG 7349 Query 77840 TGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTC 77899 ||| || | || | ||| | | || || | | ||| | || | Sbjct 7350 TGAGTCCAGGATGGCGAACCACAGGTCTTGCGCACGCACTGTCTTTTTTACTTTCCCAGC 7409 Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA-TCATCCAATCCAG 77958 | |||| ||||| ||| || ||||| || | | || ||| || |||| |||| Sbjct 7410 TTTTTCGTATTGCAGATACAGGACCTCAAACTCTT-TGCCATGACAGTCGCCCAAGCCAG 7468 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGA 78018 | || | || || ||||||| |||||| |||||||||| |||| |||||||| | Sbjct 7469 GACACTGATCAGGACACATCAGTGACCAAATCCCATCTTCCTCCACTCTCTTCATAAACA 7528 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTAT 78078 ||| || ||||| || | ||| || || || | | |||||| || || | Sbjct 7529 AATCGGGAATCCAAAGCCCGTAAAAGAGGTCGCGCGCCCGGGCTTCTTCCTTCCCATGGT 7588 Query 78079 TCTTT-TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 |||| ||||| || || | ||| | ||||| | |||||| || || | || || || Sbjct 7589 TCTTCCTTAAG-TCAAGCACCTCGAAGATATCCGCATGCCAAGGCTCAATGTAAATAGCA 7647 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | |||| ||||| || || |||||||| | ||| | || || | | | || Sbjct 7648 AATGCTCCCGGTCGCTTCCCTCCCCCCTGATCGACATACCGAGCAGTCACGTCAAACACA 7707 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 | || ||| || | | || ||| ||||| || ||||| || || ||| Sbjct 7708 CGCAGCATGGGCACCAAGCCATTACTCGTTCCCTTCGTTCCTTTGATGTACGCTCCGTGC 7767 Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 |||||||| || | || | || || || || ||| |||| || | ||||| Sbjct 7768 GCGCGAATGTTGTGCACAGACAAGCCAATCCCACCCGCCGCCTTACTGATGACCGCGCAC 7827 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACA 78376 ||||||| || || ||||| ||| | || || || |||| ||||||| |||| || Sbjct 7828 TGTTTCAAGGTGTCATAGATCCCCACAATCGAATCCGCCTTCATAGTTAAGAGGAAA-CA 7886 Query 78377 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAA 78436 |||||| || | | || || || | |||||| || || || || || |||| Sbjct 7887 TGAAGACATCTGGGGGAAACGCGTCCCGGCGTGAAATAAAGTGGGCGACGCGTGAATAAA 7946 Query 78437 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 ||| || | | | | | || || || | || | |||| ||| | |||||| Sbjct 7947 CCACTTATTACTCATCAATTCATACGTCTCGAGCGCCGCCTCTAAGTCATTTCCATGAAT 8006 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || | ||| || ||||||||||||| ||| || | || ||| ||| || | || Sbjct 8007 CCCCAGCGCCACGCGCATCAACATATACTGTGGGCGCTCCACCACCTTTTTCCCAAGCTT 8066 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 ||||| ||| ||| |||| || || || |||||||||| Sbjct 8067 CAACAGGTAAGATCGCTCCATTGTCTTGAACCCAAAATAGT 8107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694617993660640