Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4035 131 2e-25 seq3524 116 5e-21 >seq4035 Length=10978 Score = 131 bits (144), Expect = 2e-25 Identities = 422/650 (65%), Gaps = 4/650 (1%) Strand=Plus/Plus Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| |||||||| | || |||||||||| |||||| |||||||||| || | | Sbjct 7460 CCAAGCCAGGACACTGATCAGGACACATCAGTGACCAAATCCCATCTTCCTCCACTCTCT 7519 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 ||||||| | ||| || ||||| || | ||| || || || | | |||||| | Sbjct 7520 TCATAAACAAATCGGGAATCCAAAGCCCGTAAAAGAGGTCGCGCGCCCGGGCTTCTTCCT 7579 Query 76665 TTCCTGTATTCTTT-TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 | || ||||| ||||| || || | ||| | ||||| | |||||| || || | Sbjct 7580 TCCCATGGTTCTTCCTTAAG-TCAAGCACCTCGAAGATATCCGCATGCCAAGGCTCAATG 7638 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | |||||||| || || |||||||| | ||| | ||||| Sbjct 7639 TAAATAGCAAATGCTCCCGGTCGCTTCCCTCCCCCCTGATCGACATACCGAGCAGTCACG 7698 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 | | | || | || ||| || | | ||| ||| || || || ||||| || || Sbjct 7699 TCAAACACACGCAGCATGGGCACCAAGCCATTACTCGTTCCCTTCGTTCCTTTGATGTAC 7758 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 ||| || ||||| || | ||| | ||| || || || ||| ||| ||| Sbjct 7759 GCTCCGTGCGCGCGAATGTTGTGCACAGACAAGCCAATCCCACCCGCCGCCTTACTGATG 7818 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAG 76962 | || || ||||||| ||||||||||| ||| | || ||| || |||| |||||| Sbjct 7819 ACCGCGCACTGTTTCAAGGTGTCATAGATCCCCACAATCGAATCCGCCTTCATAGTTAAG 7878 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 || ||||| |||||| || | | || || || | ||| || || || || || Sbjct 7879 -AGGAAACATGAAGACATCTGGGGGAAACGCGTCCCGGCGTGAAATAAAGTGGGCGACGC 7937 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCA 77082 ||| | ||||| || | | | | | || || || | | || |||| || Sbjct 7938 GTGAATAAACCACTTATTACTCATCAATTCATACGTCTCGAGCGCCGCCTCTAAGTCATT 7997 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATT 77142 | |||||| || | || || ||||||||||||| ||| || || || || ||| || Sbjct 7998 TCCATGAATCCCCAGCGCCACGCGCATCAACATATACTGTGGGCGCTCCACCACCTTTTT 8057 Query 77143 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 77192 | ||||||| ||| ||| |||| || || || |||||||||| Sbjct 8058 CCCAAGCTTCAACAGGTAAGATCGCTCCATTGTCTTGAACCCAAAATAGT 8107 >seq3524 Length=35516 Score = 116 bits (128), Expect = 5e-21 Identities = 453/711 (64%), Gaps = 6/711 (1%) Strand=Plus/Plus Query 76522 AAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA 76581 |||||| ||||| || || || ||| ||||| || || || || || | || ||||| Sbjct 11359 AAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCA 11418 Query 76582 CTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 || || || | || || || | ||| || |||||||| |||| || || || | Sbjct 11419 GTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAA 11478 Query 76642 ATCTCGGGTTCTACGTTCT---TCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || |||| | | || ||||| || ||||| ||||| |||||||| | Sbjct 11479 GTCGCGGGCCC---GCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAA 11535 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 ||||| | ||||| || || || || || || | | ||| || || || || Sbjct 11536 GATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCCCCACC 11595 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||| || | || | ||| |||| || | || | || ||| || | |||||||| || Sbjct 11596 CTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTGGA 11655 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 || || |||| ||| || || ||| || || || ||| || || | || Sbjct 11656 GGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGATCGAGACACC 11715 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || || ||||| | || ||||| ||||| | || | ||||||||||| || || Sbjct 11716 AATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCATAGATACCGTC 11775 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || || ||| ||||| | ||||| || ||| || | || | | || || Sbjct 11776 GATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCGGCGTGCC 11835 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 || || || | |||||| | || |||||||| || | || | |||||||| || Sbjct 11836 GGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGATTGTAGGT 11895 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||||| | || || | ||| | ||| ||||| | || || ||||| | ||| || Sbjct 11896 CTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCATGATCATGTG 11955 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||| ||||| || | | | || || | || ||| || || |||| || || Sbjct 11956 CTGGGGTCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTCCAGCGTCTT 12015 Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||||| ||||||| || ||||||| || || ||||| ||||||| Sbjct 12016 GAAACCGAAATAGTCATAGTCGAAGTCTCGATCATAGATAATTGCCGAATT 12066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712882257760320