Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5733 699 0.0 seq225 553 2e-152 >seq5733 Length=57551 Score = 699 bits (774), Expect = 0.0 Identities = 750/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 ||||| ||||||| ||||| || ||||| | ||||| | || | |||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTC 183306 || | ||||| ||||| | || |||| || | |||||||||| | || ||| || Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 183307 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTAT 183366 || || ||||| || || ||||| || ||||| ||||| || ||||| || || | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 183367 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTC 183426 ||||||||||| ||| | ||||||||| ||||| ||| ||||| ||||| |||||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || || | |||||||| || || | || |||||||| || |||||||||||||||||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTG 183546 || ||||| || |||||| | | || || ||||||||||| ||||| |||||| | Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 183547 TCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCT 183606 |||||| | || |||||||||||||| | || |||| || || || ||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 183607 GCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCC 183666 ||| | || || ||| | || || || | || |||||| || |||||||||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 183667 CTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 183726 | ||||| ||| || || |||| ||| | || ||||||||||| |||||||| || Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 183727 ATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCA 183786 |||||||| ||||| ||| ||||| |||||||| || ||||| ||| | |||||||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 183787 ATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTG-AGTCTGAGTCACA 183845 |||||||||||||| || || || | | |||||| |||| || | | || | Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGCGTATCT 41209 Query 183846 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 | ||||| |||||||| ||||| ||||||||||| || |||||||| || ||||| || Sbjct 41208 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 41149 Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || |||||||| ||| | |||||||| || || || ||||| || ||| || | ||| Sbjct 41148 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACAC 41089 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 |||||| | ||||| |||||||| || || |||||||| ||||||||||||||||| ||| Sbjct 41088 TTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 41029 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 |||||||||||| | || ||||| ||||||||||| || | ||||| ||||||||||| Sbjct 41028 ATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGT 40969 Query 184084 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 184143 || | ||||| ||||| ||| || |||||||||||| | | || |||||||| |||||| Sbjct 40968 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 40909 Query 184144 GAGCGTAATGCTCACAACTTCCCTCTCGA 184172 || ||||| || |||||||||||||| || Sbjct 40908 GAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 553 bits (612), Expect = 2e-152 Identities = 729/1008 (72%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||| | ||||| || || || || ||| | || ||||| || | || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 186033 CCCA-CTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTG 186091 |||| | || | | | ||| ||||||| ||| | || || || || |||||||| || Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 186092 GTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGT 186151 |||||| || || || || |||||||| | || || ||| || | || | |||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 186152 GTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 186211 ||||| || || || ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 186212 AGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 186271 ||||||| ||| || ||| | ||| |||| ||| | ||| |||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 186272 AGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTAT 186331 || |||| | | || || ||| | || || || || ||| |||||| |||||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTAT 38193 Query 186332 CCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCT 186391 ||||||||||| || ||||| || ||||| ||||| || || |||||| ||||||| | Sbjct 38194 TCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCTT 38253 Query 186392 CATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAAT 186451 || || ||||| ||||| | |||||||||||||| ||||| || ||||| || Sbjct 38254 AATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTAT 38313 Query 186452 CTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACAT 186511 || |||| | || ||| | ||||| ||||| |||||||| | ||||||||||| || Sbjct 38314 TTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATAT 38373 Query 186512 GATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGT 186571 ||||||||||||||| || | || ||||| | | || ||||| ||||| | || || Sbjct 38374 GATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAGT 38433 Query 186572 AGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGAC 186631 ||||||||| || | ||||||||| || |||||||||||| || || | || Sbjct 38434 AGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAAC 38493 Query 186632 GCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGG 186691 ||| ||||||||| ||||||||||| || ||||| ||||||||||| || || || || Sbjct 38494 ACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGG 38553 Query 186692 AATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGG 186751 | || || || || ||||||||||||||||||||| | ||||||||||| | || Sbjct 38554 TGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGG 38613 Query 186752 TCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTT 186811 | | ||||| ||| |||| ||| ||||| | || | || | | || || || || Sbjct 38614 TTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTT 38673 Query 186812 TGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 186871 ||| ||| ||| | | || || || ||||| || || || || ||||| || || || Sbjct 38674 CGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 38733 Query 186872 TATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAA 186931 |||| |||| ||||||||| | | | |||||||| || || |||||||||||||| Sbjct 38734 TATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAA 38793 Query 186932 CTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTGATA 186979 |||||||| || || || || || ||| | || ||||| || | ||| Sbjct 38794 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38841 Score = 105 bits (116), Expect = 8e-18 Identities = 167/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 170982 GAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAAC 171041 || |||| ||| || |||| ||| | || |||||||||||| |||||||| | Sbjct 18857 GACTGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCT 18916 Query 171042 TATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTT 171101 ||||| || | | ||| ||||||| || |||||||| | ||| ||||| || || Sbjct 18917 TATTCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATT 18976 Query 171102 GATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACC 171161 |||||||| || ||||| || | || |||||||| ||| | || ||| | | || Sbjct 18977 GATCAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACT 19036 Query 171162 TGCGTCTCATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGA-GAACCTT 171218 ||||| |||||||| || ||||||| ||| || || | || || || |||| || Sbjct 19037 TGCGTAGCATATCCTGCATCTGATTGTCAAATTTTAACAAATCAAGAGGATGAACTTT 19094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622024903326120