Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5733 740 0.0 seq225 603 1e-167 >seq5733 Length=57551 Score = 740 bits (820), Expect = 0.0 Identities = 747/963 (78%), Gaps = 14/963 (1%) Strand=Plus/Minus Query 163949 ACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCA 164008 || || || ||||| || ||||||||||||| || | ||||| || | | || Sbjct 41835 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACA 41776 Query 164009 GCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATC 164068 || || | || ||||||||||| ||||||| || ||||| || || |||||||| ||| Sbjct 41775 GCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATC 41716 Query 164069 CGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATC 164128 || ||||| || ||||| || || | || ||||||||||| ||| | ||||| ||||| Sbjct 41715 CGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATT 41656 Query 164129 CCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTG--G 164186 ||| |||||||||||| ||| | ||||||||||| | |||||||| || ||||| | Sbjct 41655 CCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGC--GTCTGTAG 41598 Query 164187 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCA 164246 |||| ||||| |||||||||||||||| |||||| || || || |||||| | | || Sbjct 41597 ACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 41538 Query 164247 T--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTG 164304 | || |||| ||||||| ||||| ||||||||| |||||| | || ||||||||||| Sbjct 41537 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 41480 Query 164305 GATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCC 164364 ||||| |||||| | ||| ||||| || |||||||| |||||| ||| | || || || Sbjct 41479 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCC 41420 Query 164365 TTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTA 164424 | || |||||| |||||||||| |||||| | || || ||||| || ||||||| Sbjct 41419 AATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTT 41360 Query 164425 CATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGT 164484 |||||| || ||||| || || |||||||| || |||||||| ||||||||| || || Sbjct 41359 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 41300 Query 164485 AGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTC 164544 || ||||||||||| || ||| | |||||||| ||||||||||| || || || ||| Sbjct 41299 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAG 41240 Query 164545 GCTGGTTCGTGAGACCACCGAA-AATGAGTCCCAG--AACTATGGTTACAAGTTTGGTCA 164601 | | ||||| || ||| | | || | | ||||| |||||||| || || || Sbjct 41239 TTTAATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACA 41183 Query 164602 GGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCA 164661 ||||||||||| ||||||||||| || || |||||||||||||| ||| | || ||||| Sbjct 41182 AGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCA 41123 Query 164662 ATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGT 164721 |||||| ||||||||||| ||| | | ||||||||| | || |||||||| ||||| Sbjct 41122 ATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGT 41063 Query 164722 CGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAA 164781 ||||||||||| |||||||| || ||||| || |||||||| ||| | ||||||||||| Sbjct 41062 AGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAA 41003 Query 164782 CTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCT 164841 ||||||||| || | | ||| |||| ||||||||| ||||||| ||||| ||| || | Sbjct 41002 CTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTAT 40943 Query 164842 CAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCT 164901 ||||||||||| | | || |||||||| |||||||| ||||| || |||||||||||||| Sbjct 40942 CAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCT 40883 Query 164902 CGA 164904 || Sbjct 40882 AGA 40880 >seq225 Length=49998 Score = 603 bits (668), Expect = 1e-167 Identities = 741/1007 (74%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 165225 CCCA-CTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 165283 |||| | || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 165284 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGT 165343 ||||||||| ||| | || ||| ||| | || || ||||| | |||| ||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 165344 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 165403 || || |||||| || ||||||||| || | | | ||||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 165404 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 165463 ||| || |||| || ||| ||| |||| ||| | ||| ||||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 165464 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 165522 || |||| | || || ||| || || || || || || | || || ||| | |||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 165523 TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 165582 ||||||| ||||| || ||||| |||||||| |||||||| ||||| ||| ||| || Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 165583 TTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 165642 | || |||||||| |||||| | ||||||||||| || || ||||| ||||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 165643 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACA 165702 | |||||||| | | ||| | ||||| |||||||||||||| || ||||| || || | Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 165703 TGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAG 165762 ||||||| |||||||| || ||||| || ||||| | ||||| |||||||| | |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 165763 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTA 165822 |||| ||||| | | |||||||||||| |||||||| ||| || ||| | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 165823 CTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTG 165882 | || ||| ||||||||||| ||||| || || || | ||||||||||| ||||||| Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 165883 GTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGG 165942 || | |||||| || || ||||||||||| ||||| ||| | ||||||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 165943 GACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATT 166002 | | |||||||||||| ||||||| ||||| | ||| | ||| | | || || |||| Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 166003 TTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAA 166062 | || ||||| ||| || | || ||||| |||||||| |||||||| ||||| || |||| Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 166063 ACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGA 166122 | ||| | | |||||||| | | | ||| ||||| | ||||||||| ||||| | Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 166123 ACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | ||||| ||||| || || || || ||| | || ||||| |||||| Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557613614551320