Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq35 96.9 8e-15 >seq35 Length=30318 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 10843 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 10901 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 10902 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 10961 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 10962 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 11021 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 11022 CCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 11071 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 11129 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 11130 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 11189 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 11190 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 11249 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 11250 CCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 11299 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 11357 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 11358 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 11417 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 11418 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 11477 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 11478 CCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 11527 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 11585 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 11586 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 11645 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 11646 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 11705 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 11706 CCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 11755 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 11813 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 11814 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 11873 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 11874 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 11933 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 11934 CCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 11983 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 12041 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 12042 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 12101 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 12102 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 12161 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 12162 CCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 12211 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 12269 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 12270 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 12329 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| |||||| || || || || || |||| Sbjct 12330 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGTCTTGC 12389 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 12390 CCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || ||||||||||| || | | || | ||||| || | Sbjct 12439 CAAG-TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATCCTCCA 12497 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 12498 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGA 12557 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || || |||| | |||| ||| || || || || || || |||| Sbjct 12558 TCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGTCTTGC 12617 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| ||||||| ||||| Sbjct 12618 CCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153734302742021