Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq5733 744 0.0 seq225 618 5e-172 seq4011 87.8 2e-12 >seq5733 Length=57551 Score = 744 bits (824), Expect = 0.0 Identities = 770/1002 (77%), Gaps = 6/1002 (1%) Strand=Plus/Minus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||||||||| | |||||||| || | | | ||| | Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 177685 ATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 | ||| |||||| |||||||| |||| || ||||| || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || ||||| || || | || || |||||||| || | ||||| ||| ||||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 ||||||||||||||| | |||||||| || | |||||||| || ||| | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 177865 CTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTAT--CTATG 177922 || ||||| |||||||||| |||||| || | || |||||| | | ||| | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 177923 CATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTG 177982 | |||||||| ||||| ||||||||| ||||| |||| |||||||| ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 177983 TAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTC 178042 |||| | ||| |||||||| || ||||||||||| |||||| | ||||| || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 178043 AAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 178102 ||||| |||||||| | |||||| | ||||| ||| || ||||||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 178103 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTG 178162 | ||||||||||| |||||||| || |||||||| ||||| ||| || || ||||||| Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 178163 TCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC 178222 | |||||||| ||| | |||||||| |||||||||||||| || || || | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 178223 GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 178282 ||||||| || || | | ||||| |||||||| ||||| ||||||||||| | Sbjct 41231 GTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAA 41172 Query 178283 CCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCT 178342 | ||||||||||| ||||| || |||||||| || || | |||||||||||||| | Sbjct 41171 CTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTT 41112 Query 178343 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 178402 |||||||||| ||| | | ||||||||| | || |||||||| ||||| |||||||||| Sbjct 41111 TCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGT 41052 Query 178403 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 178462 | ||||||||||||||||| || |||||||| ||| | |||||||||||||||||||| | Sbjct 41051 TAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAAT 40992 Query 178463 CCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTG 178522 | | | |||||||| || || | ||||| ||||| ||| || |||||||||||| Sbjct 40991 CAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTG 40932 Query 178523 GTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTG 178582 | | ||||||||||| |||||||| ||||| || |||||||||||||| || | || | Sbjct 40931 ATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCG 40872 Query 178583 CTGCTGAAAGCAC-TCCTGTTGCTCTCACCGCACCTGCTGTT 178623 || || | | ||| ||||| | | ||| ||||||||| Sbjct 40871 TATCT-AATGTTCTTCCAGTTGCATTAAACGCTCCTGCTGTT 40831 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 18364 AGTTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCT 18423 || |||||| | || |||||||||||| || |||||||||||||||||||||||| |||| Sbjct 54285 AGATAGGGTCGATGCCCGAGTGGTTAAAGGGGGCGGACTGTAAATCCGCTGGCTCAGCCT 54344 Query 18424 ACGGGGGTTCAAATCC 18439 ||| ||||||||||| Sbjct 54345 ACGTTGGTTCAAATCC 54360 >seq225 Length=49998 Score = 618 bits (684), Expect = 5e-172 Identities = 757/1031 (73%), Gaps = 2/1031 (0%) Strand=Plus/Plus Query 178828 AAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTG 178887 |||| || | ||||| || ||||||||||| | || || ||||| ||||| ||| ||| Sbjct 37812 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTG 37871 Query 178888 GTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGG 178947 |||||||||| ||| | | ||||| || || | | ||| | || || ||| | || | Sbjct 37872 GTTGGTCAGGCCTTTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAG 37931 Query 178948 GCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGAT 179007 | || || || || || || ||||||||||| || | || ||||| ||| | || |||| Sbjct 37932 GTACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGAT 37991 Query 179008 GTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTC 179067 |||| ||| | |||| || |||||||| || || || | | || || || || || Sbjct 37992 GTAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTT 38051 Query 179068 TTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTAT 179127 | ||||||| || ||||| || ||||||||| || ||||| ||| |||| ||| ||| Sbjct 38052 TATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 38111 Query 179128 GGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTT 179186 || ||||| | || || |||||||| || | | | || || ||| || || || || || Sbjct 38112 GGGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 38170 Query 179187 GAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATT 179246 || ||||| ||||| || ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 38171 GAGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATT 38230 Query 179247 GCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCG 179306 || || ||||| ||||| || | || |||||||| ||||| | |||||||| || Sbjct 38231 GCGGTATTTGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCT 38290 Query 179307 CCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAAC 179366 || ||||| |||||||| |||||||| || || | ||| |||| || ||||| ||| Sbjct 38291 CCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAAC 38350 Query 179367 TGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTT 179426 ||||| || || || ||||| ||||||||||||||||| || | || || ||||| | Sbjct 38351 TGGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTA 38410 Query 179427 TGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAAT 179486 | ||| |||||||| || |||||||| || ||||| |||||||| |||| |||| Sbjct 38411 TCTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAAC 38470 Query 179487 ACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAAC 179546 |||||| || || || |||||| ||| || || ||||||||||| || || || Sbjct 38471 ACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAAT 38530 Query 179547 CGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTT 179606 | ||||||||||| || |||||| | || ||| || || |||||||| |||||||| Sbjct 38531 AGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTC 38590 Query 179607 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCA 179666 ||||| ||||||||||| | ||| | ||||| | |||||||| ||||| | ||| Sbjct 38591 ATGTTATTTGTTCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCA 38650 Query 179667 CTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAG 179726 | || | ||||| || || || || || |||||| | | ||||| || ||||| || Sbjct 38651 TTAAATTTAAGAGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAA 38710 Query 179727 TTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCA 179786 || || || ||||| || || || ||| |||| ||||||||| | | | |||||||| Sbjct 38711 TTTGAAACTTTCTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT 38770 Query 179787 CCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAAC 179846 || || |||||||||||||| |||||||| || || || || || ||| | || ||| Sbjct 38771 GCACAAGACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 38830 Query 179847 GCTCTGTGATA 179857 || || | ||| Sbjct 38831 GCCCTTTAATA 38841 >seq4011 Length=2654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17866 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 17921 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2403 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 2348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596263587582160