Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq5733 670 0.0 seq225 609 3e-169 >seq5733 Length=57551 Score = 670 bits (742), Expect = 0.0 Identities = 726/959 (76%), Gaps = 4/959 (0%) Strand=Plus/Minus Query 169372 CACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGC 169431 ||| || |||||| | || ||||||||||||| || | |||||||| | | | Sbjct 41836 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 41777 Query 169432 AGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCAT 169491 ||| || | || ||||||||||| ||||||| || || || || || ||||| || || Sbjct 41776 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 41717 Query 169492 CCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 169551 ||| ||||| || ||||| || || | || || |||||||| ||| | ||||| ||| | Sbjct 41716 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTAT 41657 Query 169552 GCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGA 169611 || ||| ||||| || ||| |||||||||| || | |||||||| || | | || Sbjct 41656 TCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 41597 Query 169612 TGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCAT 169671 || ||| | |||||||||||||||| |||||| || || || |||||| | | || | Sbjct 41596 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGT 41537 Query 169672 --CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGG 169729 || |||| ||||||| ||||| |||||| | ||| ||| | || ||||| |||||| Sbjct 41536 AGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGG 41479 Query 169730 ATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCG 169789 || | || |||| ||| ||||| || || ||||| || || || ||| | || ||||| Sbjct 41478 ATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCA 41419 Query 169790 TTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTAC 169849 |||| ||||| |||||||| | ||||||| | ||||| || || || || |||| | Sbjct 41418 ATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTC 41359 Query 169850 ATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTT 169909 ||| | || |||||||| || |||||||| || |||||||| ||||| ||| ||||||| Sbjct 41358 ATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTT 41299 Query 169910 GCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGT 169969 || || ||||||||||| ||| | || || || ||||||||| || || || || ||| Sbjct 41298 GCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGT 41239 Query 169970 CTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 170029 | |||||||||| || || || ||||| |||||||| ||||| |||||| Sbjct 41238 TTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAA 41179 Query 170030 GAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATAC 170089 ||||| || ||||||||||| || || ||||||||||| || || | |||||||||||| Sbjct 41178 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATAC 41119 Query 170090 GCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGC 170149 || ||||||||||| ||| | | ||||||||| | || |||||||| ||||| || Sbjct 41118 GCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGT 41059 Query 170150 ATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTC 170209 |||||||| || ||||||||||| || ||||| || ||| | ||||||||||||||| Sbjct 41058 ATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTC 40999 Query 170210 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAAC 170269 ||||| || | | ||| |||| ||||||||| ||||||| ||||| ||| || ||||| Sbjct 40998 AACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAAC 40939 Query 170270 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 170328 ||||||| | | || |||||||| |||||||| ||||| || |||||||||||||| || Sbjct 40938 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 609 bits (674), Expect = 3e-169 Identities = 745/1009 (74%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTT 170666 ||||||||| | ||||| ||||| || || ||| | || ||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 170667 CCCA-CTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTG 170725 |||| | || | ||||||| |||| || ||| | || || ||||| ||||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 170726 GTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGT 170785 ||| || || ||| | ||| ||| || | ||||| ||| ||| | || | || || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 170786 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 170845 ||||| || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 170846 GGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 170905 || |||||| || ||| | ||| |||| ||| | ||| |||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 170906 AGCCTTTGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 || |||| | | || || ||| || || || || || || ||| |||||| ||||| | Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 || | || ||||| ||||| || |||||||| ||||| || || ||||| || ||| Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | || |||||||| || || |||||||||||||||| || ||||| |||||||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | ||||| || | | ||| | ||||||||||| ||||||||||| |||||||| |||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204 |||||||||| ||||| || | || |||||||| | |||||||||||||| | |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACA-CG 171263 |||| ||||| | | ||||||||||||| |||||||| || || ||| ||| | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACACCA 38491 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 || || ||||| || ||||| ||||| || || ||| | |||||||| || |||||| Sbjct 38492 ACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTT 38551 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || ||| || || |||||| | |||||||| ||| | ||||||||||| | Sbjct 38552 GGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACA 38611 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| ||| | | || ||| ||||| | || | ||| | || || || ||| Sbjct 38612 GGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGAT 38671 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 |||||| ||| ||| | | || || ||||||||||| || || || ||||| || || Sbjct 38672 TTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 38731 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || ||| |||| ||||||||| || | | |||||||| || |||||||||||||||| Sbjct 38732 AATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAA 38791 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || ||||| ||||||||||| ||| |||| ||||| || || |||| || Sbjct 38792 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592155088089520