Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq35 165 2e-35 seq159 149 1e-30 seq2518 141 2e-28 seq4787 122 2e-22 >seq35 Length=30318 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || |||||||| || |||| || | ||| || || |||||||||||||||| Sbjct 10821 AACCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 10880 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||||||||||||||||| || || ||||| || ||||| | || || ||||| | Sbjct 10881 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 10940 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || Sbjct 10941 GGATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCT 10999 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 11000 ACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11229 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 11230 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11457 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 11458 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11685 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 11686 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11913 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 11914 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 12141 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 12142 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 12369 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 12370 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCCAC 12597 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 12598 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 132 bits (146), Expect = 1e-25 Identities = 156/207 (75%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || |||| || | ||| || || |||||||||||||||| | Sbjct 12647 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12706 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || ||||| || ||||| | || || ||||| || Sbjct 12707 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12766 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 12767 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATCGTGTCGCTGGGCTCCAC 12825 Query 283052 TTCGAGAGTGATCGTCTTACCC-GTCA 283077 || || ||||| ||||| ||| |||| Sbjct 12826 GTCCAGCGTGATGGTCTTGCCCTGTCA 12852 >seq159 Length=12779 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || || ||| || || || ||||||||||| | | Sbjct 10475 CCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAA 10534 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||| | || || || ||| || Sbjct 10535 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGG 10594 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || || | ||||| ||||| | || || Sbjct 10595 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACA 10654 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 10655 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 10701 >seq2518 Length=13831 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | |||| ||| | || || || |||||||| ||||| | Sbjct 5328 CCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGAC 5269 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| ||||| ||||| || ||||| | || || || || || Sbjct 5268 AGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 5209 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| ||||| | || || Sbjct 5208 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACA 5149 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||||||||||| ||||| ||||| || ||||| ||| Sbjct 5148 TCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTTC 5098 >seq4787 Length=11161 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| | || || ||||||||||| | || || |||||| || Sbjct 6634 AGCGTACGGCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 6575 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || |||||| || ||| | ||||| ||||| | ||||| Sbjct 6574 ATACCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACA 6515 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| ||||||| ||||| ||||| || ||||| Sbjct 6514 TCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 6468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046660730214554