Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq35 152 4e-32 seq2518 143 2e-29 seq159 138 8e-28 seq4787 114 9e-21 >seq35 Length=30318 Score = 152 bits (168), Expect = 4e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 12412 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 12471 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 12472 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 12531 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 12532 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 12590 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 12591 GCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12646 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 11044 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 11103 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 11104 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 11163 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 11164 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 11222 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 11223 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11278 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 11272 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 11331 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 11332 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 11391 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 11392 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 11450 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 11451 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11506 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 11500 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 11559 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 11560 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 11619 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 11620 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 11678 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 11679 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11734 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 11728 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 11787 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 11788 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 11847 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 11848 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 11906 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 11907 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11962 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 11956 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 12015 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 12016 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 12075 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 12076 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 12134 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 12135 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12190 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 12184 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 12243 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 12244 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 12303 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 12304 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 12362 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 12363 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12418 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| || | Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||||||||| || ||||| | |||||||| || | || Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||||||||| | |||| | || |||||| || || || Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGGGCTCTAC 11001 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||| || ||||| ||||| | |||||| ||||||||||||||| Sbjct 11002 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11050 Score = 118 bits (130), Expect = 8e-22 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| Sbjct 12640 TTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTA 12699 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||||||||||||| || ||||| | |||||||| || Sbjct 12700 GTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTC 12759 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | || |||||| || Sbjct 12760 GGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCGCTGG 12818 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||||| |||| ||| || ||||| ||| Sbjct 12819 GCTCCACGTCCAGCGTGATGGTCTTGCCC 12847 >seq2518 Length=13831 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||| || || || |||||| |||||||| || || | Sbjct 5328 CCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGAC 5269 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||| |||||||| || ||||| | ||||||||||| | ||| Sbjct 5268 AGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 5209 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||||| |||| | ||||||||| || ||||| Sbjct 5208 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCAC-GTTCTCGATGGTGTCGCTGGGCTCCAC 5150 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| ||||| |||||||| |||||||||||||| Sbjct 5149 ATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 5102 >seq159 Length=12779 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| |||| ||| | || |||||||| | ||| |||||| || |||||||| || | Sbjct 10474 TCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGA 10533 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| ||||||||||| || |||||||| | ||||||||||| | || Sbjct 10534 AAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGG 10593 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| ||||||| | | || |||||| || || || Sbjct 10594 GATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAAC 10653 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| ||||| |||||||| |||||||| |||||| Sbjct 10654 ATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702 >seq4787 Length=11161 Score = 114 bits (126), Expect = 9e-21 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| ||||||||||| | |||||||| || | || | ||| ||||| Sbjct 6622 TCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTG 6563 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||||||| |||| | || |||||| || || || || | ||||| Sbjct 6562 TCCTGAATCTTTTGCTTCAC-GTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAAT 6504 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||| |||||||| ||||||||||||||| Sbjct 6503 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATG 6467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359964729422067