Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2518 156 1e-32 seq4787 134 3e-26 seq35 131 4e-25 >seq2518 Length=13831 Score = 156 bits (172), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| ||||| || || || || || || || ||||||||||| |||| ||| || | Sbjct 5105 CAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGG--AGCCCAGCG 5162 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || |||||||| |||||||| || || ||||||||||| |||| Sbjct 5163 ACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGC 5222 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || || || || || || | || || | || |||||| Sbjct 5223 AGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTATAACA 5282 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| || || || || |||||| | || ||| Sbjct 5283 TCCAGAAGGAGTCTACCCTGCATTTGGTGTTG 5314 >seq4787 Length=11161 Score = 134 bits (148), Expect = 3e-26 Identities = 125/157 (80%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || || || || || || || |||||||| || || || ||| Sbjct 6471 CAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTACCCTCGATGTCGA--GCCCAGCG 6528 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||||||||||||||| || || ||||| || ||||||| Sbjct 6529 ACACAATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAGC 6588 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | ||||||||||| ||||| || ||| | || ||||| Sbjct 6589 AGCGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGG 6625 >seq35 Length=30318 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || ||||| || ||| Sbjct 12642 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGA--GCCCAGCG 12585 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 12584 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 12525 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 12524 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 12465 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 12464 TCCAGAAGGAGTCTACGCTCCA-CTTG 12439 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 11046 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 10989 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 10988 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 10929 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 10928 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 10869 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 10868 TCCAGAAGGAGTCTACGCTCCA-CTTG 10843 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 11274 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 11217 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 11216 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 11157 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 11156 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 11097 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 11096 TCCAGAAGGAGTCTACGCTCCA-CTTG 11071 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 11502 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 11445 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 11444 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 11385 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 11384 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 11325 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 11324 TCCAGAAGGAGTCTACGCTCCA-CTTG 11299 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 11730 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 11673 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 11672 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 11613 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 11612 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 11553 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 11552 TCCAGAAGGAGTCTACGCTCCA-CTTG 11527 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 11958 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 11901 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 11900 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 11841 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 11840 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 11781 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 11780 TCCAGAAGGAGTCTACGCTCCA-CTTG 11755 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 12186 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 12129 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 12128 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 12069 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 12068 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 12009 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 12008 TCCAGAAGGAGTCTACGCTCCA-CTTG 11983 Score = 125 bits (138), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || | || || || || ||||| || || || || || ||| Sbjct 12414 CAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGA--GCCCAGCG 12357 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||| Sbjct 12356 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 12297 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || ||||| | || ||| | || || ||| Sbjct 12296 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAACA 12237 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 12236 TCCAGAAGGAGTCTACGCTCCA-CTTG 12211 Score = 118 bits (130), Expect = 3e-21 Identities = 138/183 (75%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAA 178005 || || || ||||| || || ||||| || ||| |||| ||||||||||| || || | Sbjct 12846 GGCAAGACCATCACGCTGGACGTGGA--GCCCAGCGACACGATCGAGAACGTGAAGCAGA 12789 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| |||||||| || || ||||| || |||||||| || || |||||||| || || | Sbjct 12788 AGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGGAAGC 12729 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || ||||| | || ||| | || || ||| |||| || || || || || || | Sbjct 12728 AGCTGGAGGATGGCCGCACGCTTTCTGACTACAACATCCAGAAGGAGTCTACGCTCCA-C 12670 Query 178126 TTG 178128 ||| Sbjct 12669 TTG 12667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203640961162094