Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2518 170 2e-37 seq159 150 2e-31 seq4787 93.3 4e-14 >seq2518 Length=13831 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| ||||||| |||||| || ||||||||| ||||||||||| | Sbjct 5330 CGCCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTG 5271 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || || ||| |||| || || ||||| || ||||| || |||||||| || |||| | Sbjct 5270 ACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAG 5211 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||||| ||| |||||||||| | | |||||||| | ||||| Sbjct 5210 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 5151 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | || || || ||||||||||| ||||| ||||| || ||||| || Sbjct 5150 CATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTT 5099 >seq159 Length=12779 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || ||||| || || || | ||||| |||| ||| ||||||||||||||| ||||| Sbjct 10472 CCTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCC 10531 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||| || || || |||||||| || || | | Sbjct 10532 GAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGG 10591 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812 || | | ||||||||| ||| |||||||||| | | |||||||| | ||| Sbjct 10592 GGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCA 10651 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || |||||||| ||||| ||||| ||||||||| Sbjct 10652 ACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702 >seq4787 Length=11161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || | |||||||||||| || || || ||||| ||||| | ||| Sbjct 6635 GAGCGTACGGCCATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGG 6576 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || |||||||||| | | |||||||| | ||| || Sbjct 6575 GATACCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGAC 6516 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || |||||||| ||||| ||||| || |||||| Sbjct 6515 ATCGAGGGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATG 6467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270188241200