Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3723 129 1e-24 seq2806 89.7 1e-12 >seq3723 Length=25211 Score = 129 bits (142), Expect = 1e-24 Identities = 661/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 4146 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 4087 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 4086 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 4027 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | || | || | | || || |||| |||||| || || Sbjct 4026 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 3967 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCA-- 319227 ||| || |||||||| || | ||| | || | || | | || | | || Sbjct 3966 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 3909 Query 319228 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 319286 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 3908 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 3850 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 319344 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 3849 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 3790 Query 319345 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 319401 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 3789 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 3735 Query 319402 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 319461 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 3734 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 3678 Query 319462 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 319521 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 3677 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 3618 Query 319522 ACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGG 319581 || | | || ||||||| | || |||| ||||| || | |||| Sbjct 3617 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 3558 Query 319582 TTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 319641 || |||||||| ||||| | || | | ||| ||| | ||||| ||||| || || | Sbjct 3557 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 3498 Query 319642 AGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 319700 | |||||| ||||| || ||||||||||| || || ||| ||| | Sbjct 3497 AATTTCATCTTCCAACCACCGGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 3438 Query 319701 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 319759 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 3437 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 3386 Query 319760 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGA 319818 | |||| || | | ||| ||||| | | | | | || || || | | || Sbjct 3385 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 3327 Query 319819 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGGCC 319877 | ||| ||||| | |||| |||| | | ||| | ||||| || || |||||||| Sbjct 3326 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 3268 Query 319878 GTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 319937 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 3267 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 3208 Query 319938 GCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGC 319997 |||| || || || ||| | || | ||||||| ||||| | |||||||| || Sbjct 3207 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 3148 Query 319998 CAGAGAAAATTCACAAT 320014 || || || || |||| Sbjct 3147 AAGCGAGAACTCGCAAT 3131 >seq2806 Length=1632 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||||| ||||||||||||||| |||||||||| | ||||||| | |||||||||| Sbjct 149 AAACGCACACCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGG 90 Query 165762 GTTCGAGCCCCACG 165775 |||||||||||||| Sbjct 89 GTTCGAGCCCCACG 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057768959764430