Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq963 107 2e-18 >seq963 Length=117303 Score = 107 bits (118), Expect = 2e-18 Identities = 302/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| ||||| || || || || | || || || | || || || ||||| || | Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | || |||||| || |||||||| | |||||| || | | ||| || |||| Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 41287 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || || || || |||||||| | || ||||| ||||||| | | Sbjct 41286 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 41227 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | | ||| || | |||| | |||||| | ||| | || ||||| || | Sbjct 41226 GGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAA 41167 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTA-TATACGTATCGATGAGTAGG 17254 | || | | | ||||| || | || ||| |||| ||||| || || || Sbjct 41166 TAGCACGCAGGAGATGATCTTTCTC-TACAGCATTCTTAATATATGTATCAATAAGCAGT 41108 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || | || ||||| || ||||| || || || ||||| ||||||||||| || ||| Sbjct 41107 GAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCT 41048 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCCGT 17372 || | || ||| ||||| | || |||| || ||||| || ||||| ||||| | Sbjct 41047 TCAGGTACTTGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCAT 40990 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | || || || ||||| || | | ||||||||| |||| Sbjct 40989 CACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAAT 40951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517519328091480