Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq963 114 1e-20 >seq963 Length=117303 Score = 114 bits (126), Expect = 1e-20 Identities = 385/592 (65%), Gaps = 18/592 (3%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| ||||| || ||||| || | ||||| || | || || || ||||| || | Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || |||||||| | ||| || || | |||| || || || Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAG-AGCAGAAGGAGCCA 41288 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG---CA 16369 || ||||| || || || || || ||||| || | || ||||||||||||| | || Sbjct 41287 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 41228 Query 16370 TCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT 16429 | || ||| || || |||| | |||||| | || | ||| ||||| Sbjct 41227 CGGGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTA 41171 Query 16430 TCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT---C 16486 || || || | | | ||||| || | || | ||||| |||||||| | Sbjct 41170 TCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGC 41111 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCAT 16546 ||| || || | || ||||| || ||||| || || || ||||| || || ||||| Sbjct 41110 AGTGAA---TAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAG 41054 Query 16547 CGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGA 16604 ||||| || | || ||| ||||| | ||| |||| || || ||||||||||| | Sbjct 41053 CGAGCTTCAGGTACTTGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAA 40996 Query 16605 TACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG 16664 | || ||||| || |||||||| || | | |||||||| |||| ||| | | Sbjct 40995 TGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCG 40936 Query 16665 TAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 |||| | | |||||| || | ||| | | || | ||||| | ||||| || Sbjct 40935 TAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACG 40876 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||| | || || || ||||||| ||| | || || | || || ||||| Sbjct 40875 AAGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAA 40824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511388439326520