Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq963 228 1e-54 seq3725 172 7e-38 >seq963 Length=117303 Score = 228 bits (252), Expect = 1e-54 Identities = 423/613 (69%), Gaps = 21/613 (3%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | ||| || || || ||| | ||| || || | |||||||| ||||| || | Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | | || || ||||| || ||||| || || |||||||| || || ||| || || ||| Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 41288 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-------AC- 24297 || |||||||| |||||||| | ||||| || | || | ||| | || || Sbjct 41287 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 41228 Query 24298 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 ||| | | || |||||| | ||||||| ||| ||||| || ||||| || || | Sbjct 41227 CGGGGGTCACA-----CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 41173 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 | || |||||| | ||||| | ||| || | || |||| |||||||||||| | Sbjct 41172 TATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAA 41113 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 || ||| | ||||| ||||| || || || || |||||||| ||||| || || | Sbjct 41112 GCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGC 41053 Query 24478 TAGCCTC-GGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTA 24534 ||| || |||| | || ||||| | | ||| |||| || | ||| |||||||| | Sbjct 41052 GAGCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAA 40996 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || ||||||||||||||||| || | ||||| || ||||||| ||| | | Sbjct 40995 TGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCG 40936 Query 24595 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 24654 | ||| | |||||||| |||| ||| | | || | ||||| ||||||| || | Sbjct 40935 TAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACG 40876 Query 24655 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 24714 | ||||| || || || ||||| | ||| | ||| | | ||||| ||||||| |||| Sbjct 40875 AAGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAA 40816 Query 24715 ATCTATTTGGATT 24727 | | ||| || || Sbjct 40815 AACGATTCGGGTT 40803 >seq3725 Length=16789 Score = 172 bits (190), Expect = 7e-38 Identities = 787/1237 (64%), Gaps = 22/1237 (2%) Strand=Plus/Minus Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 ||||| ||||| || || || ||||| || || || | || | | ||| || || | | Sbjct 2872 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2813 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2812 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2753 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2752 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2693 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT 53686 ||||| | | | || || |||||| | ||| || | || || || || Sbjct 2692 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2633 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 |||||| | || || | ||| |||| || || ||||| ||||||| | | Sbjct 2632 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2573 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2572 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2513 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || ||| ||| || |||||| | || || |||||| || || |||||||| Sbjct 2512 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2453 Query 53867 GATTCTATAATCGCTTT-CCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | |||| ||| ||| ||| | | || || ||| | || | | | | | Sbjct 2452 GCATCTAAAAT-GCTGAACCATAGCTGCTGCGCATTAATTGTC--TTGCGAGCGCGTCCC 2396 Query 53926 TC--TTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||||| | ||| || ||| || |||||||||||||| | || | | Sbjct 2395 TCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGC 2337 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||| ||| | |||||| | || ||||| || | | | | ||| ||||||||||| Sbjct 2336 AGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAA 2277 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 |||||||||||||| ||||| |||| || | | || || || || || Sbjct 2276 CAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG-- 2219 Query 54103 ATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 | |||||| || || || ||| | | | || | ||||||||| ||||||||||| Sbjct 2218 -TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATAT 2160 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | ||| |||||| ||| || || || | ||||| || |||| ||| | Sbjct 2159 AGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAA 2100 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 2099 CACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGTT 2040 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | |||| || || || || | || ||||| || ||| ||| || || | || Sbjct 2039 AGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACGC 1980 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| | || || || ||||| || || || || ||||||| ||| |||| ||| Sbjct 1979 ACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAA 1920 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| |||| |||| | ||| |||||| |||||||| || || || | || || || Sbjct 1919 ACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAGT 1860 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| | || | ||| | | | ||||||||| | ||| | | |||| | || Sbjct 1859 AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGTG 1800 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || |||| || || ||||| | | || || |||| || |||| || | || Sbjct 1799 GATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGA----CTTTTCCAT 1744 Query 54580 TTTCA-GCAAG---TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || | ||| || ||| || | ||||| || || ||||||| || ||||| Sbjct 1743 TAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGT 1684 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | || |||| ||| || | ||||| || | ||| || Sbjct 1683 CCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593691461207280