Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1704 140 4e-28 >seq1704 Length=9670 Score = 140 bits (154), Expect = 4e-28 Identities = 390/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| ||||| || | |||| |||||||| || | ||| |||||||| || || Sbjct 3005 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 3064 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || || | || ||||||| || |||| | |||||||| || || Sbjct 3065 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 3124 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || |||||||| ||||||||||||||| |||||| || || || || Sbjct 3125 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 3184 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 |||||||||| ||||| || | | |||||| || || | ||||| | || || Sbjct 3185 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 3244 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCC 145982 ||||| ||||| || | || || | | | | | || ||||||| | || || Sbjct 3245 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTCACT-GGGGTTCGTACGGAGCTTATG 3303 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 || | || |||||||||||||| || || | || || | | || | |||| || Sbjct 3304 GATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTC-GGCGTGCATGTCCGTGT 3362 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || || || | ||| || || ||||| || || || || || || ||| | Sbjct 3363 ACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTCAC 3422 Query 146102 TGTG-CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 ||| |||||| | | | | | | || || || || ||| |||||||||| Sbjct 3423 -GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGGAA 3481 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || ||| | | | ||| || || |||||||| |||| ||| Sbjct 3482 ATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAACTC 3540 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 |||| || || | ||| || || |||| || ||||||| ||||| Sbjct 3541 TTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAA 3588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590046846226440