Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq963 159 4e-34 seq3454 116 4e-21 seq977 86.0 6e-12 >seq963 Length=117303 Score = 159 bits (176), Expect = 4e-34 Identities = 378/562 (67%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692 ||| |||||| |||||||| || |||||||| ||||||||||| | ||| ||| | ||| Sbjct 40842 GACGTGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGAC 40901 Query 116693 CT-GTCCAAGGACACGAGCGACTGG-GAGCGCTTGAACGACAACGAGCGCCATTTCATCA 116750 | || || | | | || || ||| | | ||| | ||||| || || ||||| || | Sbjct 40902 TTGGTGCATGATCTCAAG-GATTGGAAAACACTT-ACGGACAATGAACGTCATTTTATTA 40959 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GA 116808 |||| ||||| |||||||| || ||||| || ||||| || || |||||||| | | || Sbjct 40960 AGCATGTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGA 41019 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 | ||| || | || ||||| || | || || || ||||| ||||| ||||| || || Sbjct 41020 AC-TTTAGC-AATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGC 41077 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || ||||| | |||||||| | ||||| || || || || || | | | Sbjct 41078 TATCGAGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGC 41137 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | ||||| | | | || || || || ||||| || || ||||| |||| || Sbjct 41138 TGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGC 41197 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 | | ||||| || ||| | | | | | | | | | || || || || |||| Sbjct 41198 CAATTGGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGC 41257 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || | || || ||| | ||||| || ||| ||| | | || ||||||||||| Sbjct 41258 GTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAA 41317 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 |||||| || || ||||| || || | ||| |||||||| || | || || || Sbjct 41318 GAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGG 41377 Query 117169 TCTGCATTGCGACTTTGCCTGT 117190 | |||| |||||||| ||| Sbjct 41378 TATGCACACGGACTTTGCTTGT 41399 >seq3454 Length=44902 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || |||||||| || ||||| | || || ||| | Sbjct 254 AAGATGCAGATTTTTGTCAAGACACTGACGGGCAAGACGATCACGCTGGAGGTGGAATCG 195 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | || |||| | ||| |||| |||| ||||| || |||||||| | || Sbjct 194 TCTGATTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCGCCTGA 136 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| |||||||| |||| || || || ||||| Sbjct 135 CCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTA 76 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 75 CAATATCCAGAAGGAGTCGACGCTACACCTGGTGCTCCGCCTGCGTGGTGG 25 >seq977 Length=24603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| || | ||||| || | || Sbjct 10915 ATGCAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCGTCC 10974 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| || | | | ||||| | ||||| | ||||| || || || || | |||||| Sbjct 10975 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGACCAG 11034 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || ||||| |||||||| || | || || || |||||||| Sbjct 11035 CAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACACTTTCGGACTACAAT 11094 Query 40870 ATCCAGAAGG 40879 || ||||||| Sbjct 11095 ATTCAGAAGG 11104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193046185360