Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3454 122 1e-22 seq977 95.1 1e-14 >seq3454 Length=44902 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | ||| || || |||| || |||||||| ||||| || Sbjct 60 CTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAA 119 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || |||||||| || ||||| || | ||| Sbjct 120 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 178 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||||||||| || | |||||| || |||||||| || ||||| | Sbjct 179 TGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGA 238 Query 43171 CAAAGATTTGCATTTT 43186 |||| || ||||| || Sbjct 239 CAAAAATCTGCATCTT 254 >seq977 Length=24603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||||||||| || | || || || | || || |||||||| ||||| || | Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || || |||||||| | || | | ||||||||| |||||| || |||| | | | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10986 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || ||||| || | || ||||| ||||| || | ||||| ||| Sbjct 10985 TCAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACA 10926 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 10925 AAGATCTGCAT 10915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571788573109080