Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3725 152 5e-32 seq963 136 4e-27 seq977 120 3e-22 seq3454 116 3e-21 >seq3725 Length=16789 Score = 152 bits (168), Expect = 5e-32 Identities = 710/1113 (64%), Gaps = 29/1113 (3%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 ||||| || | |||| || || || | ||| ||||| || ||| |||| |||| || || Sbjct 3166 AACTCACCAG-CAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTC 3108 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||||| || || |||||||| |||||||| || ||||| || |||| || | ||||| Sbjct 3107 GTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACTAGCAAAGAGTT 3048 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---GGA 22641 | | ||||||||| | || ||| | | ||||||||| ||| | ||| Sbjct 3047 GCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGA 2988 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| || ||| ||||||| ||| | || || | || || |||||| ||| | Sbjct 2987 CGGGGTGACAC---CCCACATGTCGAACTGGAAGATACCCTTGCTGGCCGGGGAGCCCTG 2931 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 | || |||||||| || | ||||| || | | ||||| || | || Sbjct 2930 AAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCCATCGAAGCATA 2871 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCGGCGACGCTTTCGTACGGCA 22820 ||| || ||||| || || |||||||||| ||| | | | || |||||||| ||| || Sbjct 2870 ATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCT-CGCTTTCGAACG-CA 2813 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||| | | ||| || || |||| ||||||||| || || || | || |||| Sbjct 2812 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2753 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || ||| | ||||| | | || || | || || || |||| Sbjct 2752 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2693 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 | ||| | ||| || | ||||| | | ||||| | || || Sbjct 2692 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2633 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | | |||||||| | || | || || | ||||| ||||||||||| || Sbjct 2632 T---CCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGC 2576 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 ||||| ||||| | | || || | || || | |||||||| | ||| | Sbjct 2575 GACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGC 2516 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||| || || ||| | ||||| ||||||| | ||| ||||||||| | | Sbjct 2515 TGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATC 2456 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGT--CTGAGCGTGAACACGTC--GCACGTACCT 23235 |||| || | || ||| | ||||| ||| || | || ||| || | | | Sbjct 2455 TGCGCATCTAAAAT-GCTGAAC-CATAGCTGCTGCGCATTAATT-GTCTTGCGAGCGCGT 2399 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| ||| |||||||||| || | || || || ||| | || | || ||| || Sbjct 2398 CCCTCCTTT-TCGTACTTTTCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAG 2340 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 | || | || ||||||| | | ||||||| | | |||| ||| || ||| | Sbjct 2339 AGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTT---GCCATTAGCTTCCACCCGTTT 2283 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| ||||| || ||||||||||||||||| | || || || || | || || Sbjct 2282 CATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATT 2223 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| ||| || || || | ||| || |||||||| |||||||||||||| | ||| Sbjct 2222 ACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTA 2163 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||| | || | || || || || || ||||| |||||||||| ||| Sbjct 2162 TATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTT 2103 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||| | || ||| || | || ||||| || Sbjct 2102 AAACACCCGTAACATGGGAATGATCCCGTTAGA 2070 >seq963 Length=117303 Score = 136 bits (150), Expect = 4e-27 Identities = 538/834 (65%), Gaps = 12/834 (1%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| || || || || ||||| ||||| | |||||| | ||| Sbjct 40842 GACGTGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGAC 40901 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | ||||| | |||||| | | || | || ||| | |||||||||| Sbjct 40902 TTGGTGCATGATCTCAAGGATTGGAAAACACTTACGGACAATGAACGTCATTTTATTAAG 40961 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || ||||| || || ||||| ||||| || |||||| | | | | | Sbjct 40962 CATGTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGA-A 41020 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| ||| ||||||||||| | || || | ||||||||||| |||||| | || || Sbjct 41021 CTTTAGCAATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGCTAT 41080 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || || | || || || | ||||| || || || ||||| || | ||| | | Sbjct 41081 CGAGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGT 41140 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 |||||| | || | || || || || || || || ||||| || | Sbjct 41141 AGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAA 41200 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATCGCGT 57984 ||| || |||| ||| | | | | | || ||| ||| || | ||| | |||| Sbjct 41201 TTGGGCACTCAAGTGG-TGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGT 41259 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 | || | || ||||| || ||||| || ||| ||| ||| | || |||||| | ||| Sbjct 41260 TTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGC-TCTATCTTTTGGCTCAAG 41318 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 ||||| || |||||||| || || | || |||||| | || || || || ||| Sbjct 41319 AAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGT 41378 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC-GCGGGA 58162 | || || || ||||| || || |||||||| | | || || ||| | | ||| | Sbjct 41379 ATGCACACGGACTTTGCTTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAGCGAG- 41437 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 ||| | || ||||| || || || | || || | |||||||| || | Sbjct 41438 TCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTC 41497 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 || || || | | | || |||||| | | |||| ||||||||||||| || Sbjct 41498 GCTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGT 41557 Query 58283 TGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCG 58340 || ||| | || | | ||| |||| || | ||| | | || ||||| Sbjct 41558 GGCTGACCGTCTGCTATACTC--ACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCA 41615 Query 58341 TTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAAA 58394 || || | ||| || |||||||||| | |||||||| ||||||||||| ||| Sbjct 41616 TTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAA 41669 >seq977 Length=24603 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || |||||| |||||||||| || || || | ||||| || || Sbjct 10911 AATCATGCAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCC 10970 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | | || | ||||| |||| ||| |||||||||||| | || || || Sbjct 10971 GTCCGACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGA 11030 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||||| || || |||||||| ||| ||||||| Sbjct 11031 CCAGCAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGA 11069 >seq3454 Length=44902 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| ||||| |||||||| | || || ||| || Sbjct 254 AAGATGCAGATTTTTGTCAAGACACTGACGGGCAAGACGATCACGCTGGAGGTGGAATCG 195 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | || | || || || | || |||||||||||| | ||||| ||| Sbjct 194 TCTGATTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCGCCTGAC 135 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || |||||||| ||| |||||||| | || || || || Sbjct 134 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTAC 75 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || || ||||| || | ||| | || |||| Sbjct 74 AATATCCAGAAGGAGTCGACGCTACACCTGGTGCTCCGCCTGCGTGGTGGTA 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743771783120