Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq963 226 4e-54 seq3725 170 3e-37 >seq963 Length=117303 Score = 226 bits (250), Expect = 4e-54 Identities = 416/602 (69%), Gaps = 11/602 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| | ||| || || || ||| | ||| || || | |||||||| ||||| || | Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | | || || ||||| || ||||| || || |||||||| || || ||| || || ||| Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 41288 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 || |||||||| |||||||| | ||||| || | || | || | || | || Sbjct 41287 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 41228 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | | | |||||| | ||||||| ||| ||||| || ||||| || || || || Sbjct 41227 CGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCA 41168 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 |||||| | ||||| | ||| || | || |||| |||||||||||| | || Sbjct 41167 ATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGT 41108 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||| | ||||| ||||| || || || || |||||||| ||||| || || | ||| Sbjct 41107 GAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCT 41048 Query 36506 TC-GGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCG 36562 || |||| | || ||||| | | ||| |||| || | ||| |||||||| || || Sbjct 41047 TCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCA 40991 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 ||||||||||||||||| || | ||||| || ||||||| ||| || || ||| Sbjct 40990 TCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGT 40931 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 | |||||||| |||| ||| | | || | ||||| ||||||| || || ||| Sbjct 40930 GTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCC 40871 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 || || || || ||||| | ||| | ||| | | ||||| ||||||| ||||| | | Sbjct 40870 TCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACGA 40811 Query 36743 TT 36744 || Sbjct 40810 TT 40809 >seq3725 Length=16789 Score = 170 bits (188), Expect = 3e-37 Identities = 787/1235 (64%), Gaps = 18/1235 (1%) Strand=Plus/Minus Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537 ||||| ||||| || || || ||||| || || || | || | | ||| || || | | Sbjct 2872 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2813 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2812 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2753 Query 65598 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2752 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2693 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT 65717 || || | | | || || |||||| | ||| || | || || | || Sbjct 2692 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2633 Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 |||||| | || || ||||| |||| || || ||||| ||||||| | | Sbjct 2632 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2573 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2572 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2513 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || ||| ||| || |||||| | || || ||||| || || |||||||| Sbjct 2512 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2453 Query 65898 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 65955 | |||| ||| ||| ||| | | || | || || ||| | || | | | | Sbjct 2452 GCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGTC--TTGCGAGCGCGTCC 2397 Query 65956 CTC--TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 ||| ||||||| | ||| || ||| ||||||||||||||||| | || | Sbjct 2396 CTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAG 2338 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 ||||| ||| | |||||| | || ||||| || | | | | ||| |||||||||| Sbjct 2337 CAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAA 2278 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 | |||||||||||||| ||||| ||||| || | | || || || || || Sbjct 2277 ACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG- 2219 Query 66133 TATTCTTTTTA---AGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| || || || ||| | | | || ||||||||| |||||||||| Sbjct 2218 --TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATA 2161 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || | ||| |||||| ||| || || || | ||||| || |||| ||| Sbjct 2160 TAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAA 2101 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 2100 ACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGT 2041 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | || || || || || | || || || || ||| ||| || || | | Sbjct 2040 TAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACG 1981 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| | || || || ||||| || || || || ||||||| ||| |||| || Sbjct 1980 CACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 1921 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| |||| |||| | ||| |||||| |||||||| || || || | || || | Sbjct 1920 AACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAG 1861 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | Sbjct 1860 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGT 1801 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | || |||| || || ||||| | | || || |||| || |||| ||| | ||| Sbjct 1800 GGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGA-CTTTTCCATTA 1742 Query 66610 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 || || || ||| || | ||||| || || ||||||| || |||||| Sbjct 1741 ACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCC 1682 Query 66669 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 || |||| ||| || | ||||| || | ||| || Sbjct 1681 CGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658139389503240