Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq963 136 4e-27 >seq963 Length=117303 Score = 136 bits (150), Expect = 4e-27 Identities = 377/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || ||||| | |||||| || ||||| || || | | || ||||||| || ||||| Sbjct 41377 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 41318 Query 13953 tttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||| || | |||| || || || || ||||| || || || || | |||||| Sbjct 41317 TTGAGCCAAAAGATAG-AGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAA 41259 Query 14012 CGCTATTAATCGTTCTCCAAACGATG-CTTTTTTGTTCGATATCCATTTTCTAGCCCATT 14070 ||| | || ||||| | |||||| | | | | ||| || ||||| | Sbjct 41258 CGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACA-CCACTTGAGTGCCCAAT 41200 Query 14071 CAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTT 14130 | ||| || || | | | || || ||||||||| | | || || |||||| Sbjct 41199 TGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTA 41140 Query 14131 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190 || | | ||| |||||||||||||| | ||| | || ||||| || || || | Sbjct 41139 CAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGA 41080 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATC 14250 |||| || |||||||| |||||||| | |||||| | ||| ||||| | ||| Sbjct 41079 TAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGT 41020 Query 14251 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14310 | ||| | ||| ||||| || || |||||||| ||||||||||| || | | | | Sbjct 41019 TCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCT 40960 Query 14311 TAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGATAAATCCT-TAGAA 14366 |||||| | || |||||||| | ||| |||||||||| | ||| | | | Sbjct 40959 TAATAA---AATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCA 40903 Query 14367 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATT 14426 || || | || || ||||||| || ||| | ||||| || |||||| ||| | Sbjct 40902 AG-TCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACATTTGCCACACG 40844 Query 14427 TCTTTATATAATATAGGAAAAACTACAAA 14455 || || | |||||||||| ||||| Sbjct 40843 TCGTTCTCCTGAATAGGAAAAAGCACAAA 40815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703647807400