Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq963 131 2e-25 >seq963 Length=117303 Score = 131 bits (144), Expect = 2e-25 Identities = 378/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || ||||| | |||||| || ||||| || || | | || ||||||| || ||||| Sbjct 41377 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 41318 Query 13741 tttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | |||||| || | ||| ||| || || || ||||| || || || || | |||||| Sbjct 41317 TTGAGCCAAAAGATAG-AGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAA 41259 Query 13800 CGCTATTAGTCGTTCTCCAAACGATG-CTTTTTTGTTTGATATCCATTTTCTAGCCCATT 13858 ||| | ||| ||||| | |||||| | | | | | ||| || ||||| | Sbjct 41258 CGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCACA-CCACTTGAGTGCCCAAT 41200 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTT 13918 | ||| || || | | | || || || || ||| | | ||| || |||||| Sbjct 41199 TGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTA 41140 Query 13919 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978 || | | ||| |||||||||||||| | ||| | || ||||| || || || | Sbjct 41139 CAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGA 41080 Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038 |||| || |||||||| ||||| || | |||||| | ||| || || | ||| Sbjct 41079 TAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAA-G 41021 Query 14039 TTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTT 14097 || || | || || ||||| ||||| |||||||| ||||||||||| || | | | Sbjct 41020 TTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGC 40961 Query 14098 TTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCT-TAGA 14153 ||||||| | || |||||||| | ||| |||||||||| | ||| | | Sbjct 40960 TTAATAA---AATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACC 40904 Query 14154 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 ||| || | || || ||||||| || ||| | ||||| || |||||| ||| | Sbjct 40903 AAG-TCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACATTTGCCACAC 40845 Query 14214 TTCTTTATATAATATAGGAAAAACTACAAA 14243 || || | |||||||||| ||||| Sbjct 40844 GTCGTTCTCCTGAATAGGAAAAAGCACAAA 40815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478564505636040