Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3725 203 4e-47 seq963 196 6e-45 >seq3725 Length=16789 Score = 203 bits (224), Expect = 4e-47 Identities = 910/1423 (64%), Gaps = 34/1423 (2%) Strand=Plus/Minus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 ||||||| ||||| || ||||| ||||| || || || | || | | ||| || || | Sbjct 2874 CATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACG 2815 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 ||| || | |||||| || || || || | || ||||| ||||| || | ||| | || Sbjct 2814 CATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGT 2755 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | | | | || || || ||| |||| || || || || || | || |||| || | Sbjct 2754 GGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGT 2695 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 | || || | | | || || |||||| | || || | || || || | Sbjct 2694 TAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGT 2635 Query 71678 CTATTACAAAC--ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 | |||||| | || || || ||||| |||| || || ||||| ||||||| | Sbjct 2634 CCTCCACAAACTTAGGT--AAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGG 2577 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | ||| | || | ||| ||| | ||||| | ||| || || | ||| || Sbjct 2576 CGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTG 2517 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || || ||| ||| || |||||| | || ||||| || || || ||||| Sbjct 2516 CTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAAT 2457 Query 71856 CTGAGATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATATTCTTGT-ATCT 71912 ||| | |||| ||| ||| ||| | | || | || || ||| | |||| | | Sbjct 2456 CTGCGCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGT---CTTGCGAGCG 2402 Query 71913 CTTTTCTC--TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAGCATT-GT 71968 | | ||| ||||||| | | ||| || ||| ||||||||||||||||| ||| | || Sbjct 2401 CGTCCCTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCA-GCACTCGT 2344 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | ||||| ||| |||||||| | || ||||| |||| | | | || |||| Sbjct 2343 AGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTT 2284 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||||||| |||||||||||||| ||||| |||| || | | || ||| || | Sbjct 2283 TCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCAT 2224 Query 72089 TTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | || | |||||| || || || ||| | | | || | ||||||||| |||| Sbjct 2223 TACCG---TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCA 2167 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||||||| || | ||| |||||| ||| || || || | ||||| || |||| Sbjct 2166 AGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGT 2107 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 ||| | || | ||||| ||||| || || || || | |||||| || || |||| Sbjct 2106 CGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATAT 2047 Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 |||| | |||| || || ||| || | || || || || ||| ||| || | Sbjct 2046 AGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAA 1987 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | || ||| | || || || ||||| || || || || ||||||| ||| | Sbjct 1986 TGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTA 1927 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 ||| |||||| |||| |||| | ||| |||||| |||||||| || || || | | Sbjct 1926 GTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCG 1867 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | || ||||| | || | ||||| | | ||||||||| | ||| | || |||| Sbjct 1866 CATGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGT 1807 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | || || |||| || || ||||| | | || || |||| || |||| || Sbjct 1806 TCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGACTTTTC 1747 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 ||| | || | || ||| || | ||||| || || ||||||| || || Sbjct 1746 CATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAA 1687 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCA 72685 |||| || |||| ||| || | || || || | ||| || | | | || || || Sbjct 1686 AGTCCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTTGTGCTGCATCACGATCTC-- 1629 Query 72686 TGGTGATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 || |||| | | || | ||||| | || |||| || |||| || Sbjct 1628 --GT-ATACATCATCAGCTATGAGCGGAGCCGCTGCTCCTGTTTTCTCATGCACATTCTT 1572 Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 | || | | || |||||||| | || ||||| | |||||||| |||||| || Sbjct 1571 GTGGAACACGTTAATGTTGTCACTAAAGACCTTGTTTGTATTCTTGTGTAAATTTGACAC 1512 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTA 72843 ||| || | || ||||| ||| | | ||||||||||| ||| Sbjct 1511 GGCAATACGTGCCGCTAGCTTGGAAAAGTCTGGATGTTGGGTA 1469 >seq963 Length=117303 Score = 196 bits (216), Expect = 6e-45 Identities = 424/628 (68%), Gaps = 15/628 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | ||| || || || ||||| ||| ||||| | |||||||| ||||| || | Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | | || || ||||| || ||||| || || |||||||| ||||| ||| || || ||| Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 41288 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || ||||| || |||||||| | ||||| || | || | || | || | || Sbjct 41287 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 41228 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | | | |||||| | ||||||| ||| ||||| || ||||| || ||||| || Sbjct 41227 CGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCA 41168 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || ||| | ||||| | ||| || | || |||| ||||||||| || | || Sbjct 41167 ATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGT 41108 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || ||||| || || || || || ||||| ||||| || || | || Sbjct 41107 GAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCT 41048 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | || || ||||| | | ||| ||||| || | ||| || ||||| || || | Sbjct 41047 TCAGGTACTTGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCAT 40990 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTA 42527 |||||||||||||||| || | ||||| || ||||||| || | |||| || | Sbjct 40989 CACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCC---GTAA 40933 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 | | |||||||| |||| ||| | | || | ||||| | ||||| || || | Sbjct 40932 GTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAG 40873 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | || || || || ||||| | ||| | || | | ||||| || |||| ||||| | Sbjct 40872 CCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAAC 40813 Query 42648 TATTTGGATTTGGTGCAAGGATCGGTTC 42675 ||| || || |||| | |||||| Sbjct 40812 GATTCGGGTTCACAACAAGAAACGGTTC 40785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105131296360