Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3725 89.7 5e-13 >seq3725 Length=16789 Score = 89.7 bits (98), Expect = 5e-13 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 157322 TCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACG 157381 |||| ||| |||| ||||| ||||| | ||| ||| | || || |||| || Sbjct 2347 TCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACC 2288 Query 157382 CGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTG-TC 157440 ||||||||||| | ||| |||| ||||| ||||| | || |||||||| | |||| Sbjct 2287 CGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGC-TCGGTGCAA 2229 Query 157441 TTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTC 157500 ||| | || |||| ||||| || || || || | | |||| ||||||||| || Sbjct 2228 TTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTC 2169 Query 157501 AACGTACACTGCTTGGGCTCCTTTTCGCTTG---CCACCTTGATCCACGTGACGCACCAT 157557 | ||| | || || |||||| || ||| |||||||| ||||||| || || | Sbjct 2168 CAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGT 2109 Query 157558 ATTATTAAAAACTCGCAGCATTGG 157581 | ||||| || || | ||| || Sbjct 2108 GTCGTTAAACACCCGTAACATGGG 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506988662681520