Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq963 122 1e-22 seq1704 120 5e-22 >seq963 Length=117303 Score = 122 bits (134), Expect = 1e-22 Identities = 343/513 (67%), Gaps = 23/513 (4%) Strand=Plus/Plus Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| |||||||| || | || |||| || || | ||||| ||||| ||||| || || Sbjct 41231 GTCATCGTACGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGG 41290 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || ||| | ||||||||||||||||| || || || ||||| || || | | Sbjct 41291 CTCCTTCTGCT-CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCT 41349 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-T 125585 |||||| | || ||| || || || | ||| |||||||| ||| ||| | Sbjct 41350 CGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACGGACTTTGCTTGTCTCATGTACT 41409 Query 125586 CGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 || |||| | | | ||| |||||| | | || | | ||| | Sbjct 41410 CGAAACTGGTTAA---CAAATTGC-----CAGCGA-GTCGTGTGCA-CGAGATTATTCGT 41459 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704 ||||| |||| || || || |||||| | || || || || ||| ||| | ||||| Sbjct 41460 GATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTCGAGC-TCATTGG 41518 Query 125705 CATGAACT--GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||| ||| || ||||| ||||||| ||||| ||||| || ||||| || ||| Sbjct 41519 CATGAACTCGGCA--CTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATAC 41576 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 || || ||||||||| | ||||||||||| || || | ||| | || Sbjct 41577 TCACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGATATGATC 41636 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACG 125880 || ||| | || |||||||||||||||||||| || ||||||| | || ||| | Sbjct 41637 TCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATTCCAAGGCT--G 41694 Query 125881 GTGTCGGTGTCAATTTGGAGGATAATGTGTTTA 125913 |||| |||||| |||||| | ||||||| Sbjct 41695 GTGTGGGTGTCGCGGCTGAGGATCAAGTGTTTA 41727 >seq1704 Length=9670 Score = 120 bits (132), Expect = 5e-22 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 |||||||| || ||| | | ||||||| |||| ||||| ||| ||||| | |||||| Sbjct 3255 TGGAATCCGGCTGATCTAAATGAAATGGCGTTACCTCCGTGCCACATGTTTTG-TCAGTT 3197 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 |||| | |||||| || |||| ||| ||||| ||| | ||||||||||| || Sbjct 3196 TTACGTGGCGGATGGCGAACTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACT 3137 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||||| || ||||| ||||| |||||| | || | |||| || | || || | Sbjct 3136 AGGTGTGCCATTTAATATTGCCAGCTATGCGTTGCTAACGCGTTTGGTCGCGCAAGTGGT 3077 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || |||||| | ||||||| | || |||||| ||||| || | ||||| ||||| Sbjct 3076 AGGACTGAAACCTGGCGAGTTCATCCATGTCATTGGTGACGCGCATATCTATTTGAATCA 3017 Query 70465 CATCGAGCCA 70474 | | |||||| Sbjct 3016 CGTAGAGCCA 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741021581982360