Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3454 82.4 6e-11 >seq3454 Length=44902 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||||| || || || || || || ||||| || || || | ||||| Sbjct 42 CACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCTTC 101 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGG 20117 || || ||||| ||| | || || | ||| || || | |||| | |||||| ||||| Sbjct 102 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCTT 160 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||| ||||| ||||| | | ||| ||||| | |||| |||| || || || | Sbjct 161 GAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTCT 220 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| |||| || ||||||||||| ||||| || Sbjct 221 TGCCCGTCAGTGTCTTGACAAAAATCTGCATCTT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419566433187141