Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3725 325 1e-83 seq963 132 1e-25 seq1645 91.5 4e-13 >seq3725 Length=16789 Score = 325 bits (360), Expect = 1e-83 Identities = 1167/1803 (65%), Gaps = 45/1803 (2%) Strand=Plus/Plus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 |||||||| |||||||| || || | |||||| || || | |||| | ||||| Sbjct 1689 GAGTATGACTATTTCGGATTCAAAACACTTGAGAAAGGATATCTCTTTCGTGTTAATGGA 1748 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | | || || || ||||| || | | ||||| |||||| | |||||||| Sbjct 1749 AAAGTCGTGGAGCGACCGCAACAATTAATTATGCGCGTTGCTTTAGGTATCCACAAGAAC 1808 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCA 363554 || || | || || | || || || || | | || ||| || | || || || Sbjct 1809 AATATTCAAGCGGCTTTGGAGACGTACGAGTTGAT--GT-CTCAGAAGTTTTTT-ACTCA 1864 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 || |||||||| ||| ||||||||||||| | || || |||| || || ||| | Sbjct 1865 TGCGACGCCAACGTTGTTTAATGCTGGAACTCCTCGCCCCCAACTGTCCTCGTGTTTTTT 1924 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 ||| ||| |||| ||||| || || ||||| | ||||||| | ||| | ||||| Sbjct 1925 ACTAGCTATGCAGGATGATTCGATTGAAGGTATTTATGACACATTGAAGCAATGTGCGTG 1984 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 |||||||| || || || ||||| | || ||||| | || || ||||| Sbjct 1985 CATTTCCAAATGGGCTGGTGGGATTGGCATTAGTATGCACAACATACGAGCCACTAACAG 2044 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 || ||||| ||||| || | ||| || ||| | |||||||| | || |||||| | Sbjct 2045 CTATATTCGTGGCACTAATGGTTCCTCTAACGGGATCATTCCCATGTTACGGGTGTTTAA 2104 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || || | ||||| ||||| |||||||| || |||||||| | |||||||| || Sbjct 2105 CGACACGGCCCGATACGTGGACCAAGGTGGAGGCAAACGCAAAGGATCCTTTGCTATATA 2164 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAA 363913 | ||||| |||||||| | ||||||||||| || || || ||||| ||||| | Sbjct 2165 CTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACGGTA- 2223 Query 363914 AAGAGGAATTG---CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 | |||||| || || ||||| | ||||| || || ||| || |||| | |||| Sbjct 2224 ---ATGAATTGCACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGTTTA 2280 Query 363971 TGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 |||| || ||||| || | || ||| | || || || ||||| ||| | || Sbjct 2281 TGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTC 2340 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | | ||| ||||| ||||| | | | || || |||||||| ||| ||||||| Sbjct 2341 TCTACGAGTGCTGGGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGAC 2400 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 ||||| ||||||||| || ||| |||||||||| ||| | ||| ||||||||| Sbjct 2401 GCGCTCGCAAGACAATTAATGCGCAGCAGCTATGGTTCAGCATTTTAGATGCGCAGATTG 2460 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 |||| || || | |||| | | || || | |||||| ||||||||||||||| Sbjct 2461 AGACGGGCGTGCCATTTATGCTCTTTAAGGACGCAGCCAACCGTAAGTCCAACCAGCAGA 2520 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 | ||||| || || | || ||| | || ||| | || || || || | || | Sbjct 2521 ATCTTGGCACGATCCGATCCAGTAACTTGTGCTGTGAGGTAATGGAGTATACGTCGCCGG 2580 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTA 364330 | ||| ||||| || ||| | ||||| | || | || |||||| | || ||| Sbjct 2581 ATGAGGTGGCCGTGTGCAACTTGGCGTCTGTGGCTTTACCTAAGTTTGTGGAGGACGGTG 2640 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGG 364390 || ||| || || | || ||||| || || | | || | || || |||||| Sbjct 2641 TCTTCGACTACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAACCTTAACAAGG 2700 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGC 364449 |||| ||| || || || || || | || || ||| | || || ||||| || ||| Sbjct 2701 TTATTGACGTCAACTACTACCCGGTTGCAGAGGCTCGAAAG-TCCAACATGCGCCACCGC 2759 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || | || ||||||| ||||| || || || | ||| || | | || || || Sbjct 2760 CCTGTGGGCATTGGTGTTCAGGGTCTGGCCGATGCTTTCATTCTCATGAACTATGCGTTC 2819 Query 364510 GATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 || || | | ||||||| || || ||| | || ||||| || || |||| ||| | Sbjct 2820 GA-AAGCGAGCAGGCTCGTGAACTGAACAAGAATATTTTTGAGACCATCTATTATGCTTC 2878 Query 364569 AAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 || || | | || ||| |||| | | ||| |||| || | | |||| | Sbjct 2879 GATGGAGACATCCATGGAGATTGCCAAAGAAC-TGGGCCCGTACGAGACATTTCAGGGCT 2937 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCTGTCC 364684 |||| |||| | |||||||| || | ||| ||||| || | |||| | Sbjct 2938 CCCCGGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGTGTCACCCCGTCCTCTGGTC 2997 Query 364685 GATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCG 364744 ||| ||||| | | ||||| | ||||| || | |||||||| | Sbjct 2998 TTTGGGACTGGACCGCCTTGAAGGAGAACGTGATTAAGCACGGCATCCGCAACTCTTTGC 3057 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 | || || ||||| || ||||| ||||| |||||||| || |||||||||| | ||| Sbjct 3058 TAGTGGCTCCTATGCCTACTGCTTCGACTGCTCAGATCCTTGGTAACAACGAGTCCATCG 3117 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 | |||| || || | || || || || ||| | || || || || | || | Sbjct 3118 AGCCGTACACGTCGAACATGTACAACCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGA 3177 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG---- 364920 | |||||||| | || || || ||| | | | || ||| || || | Sbjct 3178 ACAAGTACCTGATGAAAGAGCTGATCGATCTGGATATCTG----GAC-GCCCGAGGTCCG 3232 Query 364921 -AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA--TTTCCAGAAGAT 364977 ||| | || | || |||||||||||| || | | || |||| || || Sbjct 3233 TAACCAGATACTGAACGACCGTGGTTCTGTGCAAAAGGT--GAAGACCATTCCGGACCAT 3290 Query 364978 CTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATTGATATG 365034 | || | |||||||| || |||||||| || || ||| || | | ||| || Sbjct 3291 GTCAAAGAGAAGTACAAAACAGTGTGGGAAAT---CAAGCAGAAATCGGTGTTAGATCTG 3347 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 |||| || || ||||||| || || ||||| |||||| ||||| | ||| | | Sbjct 3348 TCGGCTGACCGTGGTGCTTACATTTGCCAGAGTCAGTCGCTTAACATTCACATCGCCGAC 3407 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | || || || |||||||| || |||| |||||| || |||||||| Sbjct 3408 CCGACGATCAGTAAACTCACCTCCATGCACTTTTACGCTTGGAAAAAGGGGCTTAAGACG 3467 Query 365155 GGT 365157 ||| Sbjct 3468 GGT 3470 >seq963 Length=117303 Score = 132 bits (146), Expect = 1e-25 Identities = 300/448 (67%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 |||||||||||| | || |||||| ||| |||||||||||||| ||||| | || || Sbjct 41240 CGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTG 41299 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | ||||||||||| || ||||||| | ||||| ||||| | || || || ||| | Sbjct 41300 CTCTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCT 41359 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATAT 22664 |||||| || ||||| ||| | || || || ||||| ||| | | || ||| | | Sbjct 41360 AATTAGTCGTGATGAAGGTATGCACACGGACTTTGCTTGTCTCATGTACTCGAAAC---T 41416 Query 22665 CATTCATAAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTG 22723 || | ||| | ||| || | ||| | || |||||| |||| || | ||| Sbjct 41417 GGTTAACAAATTGCCA-GCGAGTCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTG 41475 Query 22724 AACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAA 22783 | | ||| | | || || | || || |||||||| || || | | | | Sbjct 41476 AGCACGAGTTTGTGCGTGACTCGCTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCA 41535 Query 22784 TGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGC 22843 || || || ||| | || || || || ||||| || ||||| ||| ||| ||| Sbjct 41536 TGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATACTCACTGGGTGTTGCCAAGA 41595 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 |||| | | | |||||||| || |||||||| | || || || |||| ||||||| Sbjct 41596 TTTATCATGCCAAGAATCCATTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCA 41655 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATA 22931 | || ||||| ||| | || || || || Sbjct 41656 ACTTTTTCGAGAAACGTGTGGGCGAGTA 41683 >seq1645 Length=18943 Score = 91.5 bits (100), Expect = 4e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 145537 CTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGAT 145596 ||||||| || || ||||| || | ||| | |||| ||| ||| ||| |||| Sbjct 18248 CTTCATCAGACAAACCAGTACCCAGCTTTGTAATTGGTTGGTACATTTCGGTGTCCGGAT 18189 Query 145597 CATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC--GGTATA 145654 |||| || || || |||||||| ||||||||||| || || || || || || || Sbjct 18188 CATAGCAAGCTAGTAGATATGCACCGTATACACCAGTGCGCTTGCCACGTCCATGGAATG 18129 Query 145655 CCCCGCAATTGGTACAAGATCACAACTA--TCACCCATTCCGGCAAGATAATCCTTTTTA 145712 | || ||| || || || || ||| ||||| || ||| | ||||||||||| || Sbjct 18128 CACC--AATCGGAACTAGGTCT--ACTGAGTCACCAATGCCGTCGAGATAATCCTTCTTC 18073 Query 145713 AGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 || |||||||| ||| ||||||| || | || || ||| Sbjct 18072 AGCTTTAGCCACTTGTGAGAACGATTAGCAGGCTCGTAG 18034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303285784475702