Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3725 134 1e-26 seq3454 98.7 9e-16 seq832 96.9 3e-15 seq977 87.8 2e-12 >seq3725 Length=16789 Score = 134 bits (148), Expect = 1e-26 Identities = 727/1139 (64%), Gaps = 40/1139 (4%) Strand=Plus/Minus Query 145033 GATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACG 145092 ||||| || | || | ||||| || |||| | ||||| || || | |||||| || Sbjct 3203 GATCAGCTCTTTCATCAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCG 3144 Query 145093 CAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGT 145152 |||| ||| |||||| | || || | |||||||| || || ||||| ||||| || Sbjct 3143 GTTGTACATGTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGT 3084 Query 145153 CGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTC 145212 || || || ||||| ||||| | || || ||||| | ||||||||| | | || Sbjct 3083 CGAAGCAGTAGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTT 3024 Query 145213 TTCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTA 145269 ||||| | | ||| ||||| || || | ||| | || ||||||||||| | Sbjct 3023 CTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAA 2964 Query 145270 CTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TT 145328 ||| || || |||| |||||| ||| ||| ||||| | || || | |||| | || Sbjct 2963 CTGGAAGATACCCTTGCTGGCCGGGGAGCCCTGAAATG-TCTCGTACGGGCCCAGTTCTT 2905 Query 145329 TGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGT 145388 |||| | ||| | ||||| | | |||| || ||||| ||| | | ||| Sbjct 2904 TGGCAATCTCCATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGT 2845 Query 145389 TGAG--CAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCATCGG 145445 | || || | || | ||||| ||| || |||| | || || | |||||||||| Sbjct 2844 TCAGTTCACGA--GCCTGCTCGCTTTCGAAC-GCATAGTTCATGAGAATGAAAGCATCGG 2788 Query 145446 CGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACT 145505 | || ||||| | || | ||| | || || || ||||||| | | | ||| Sbjct 2787 CCAGACCCTGAACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTG 2728 Query 145506 CGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTA 145564 | | || || | | | || ||| |||| || || | ||| || || ||||| || Sbjct 2727 CAACCGGGTAGTAGTTGAC-GTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTC 2669 Query 145565 ATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACG 145624 | | || ||| | |||| || || | ||| | ||||| | || | Sbjct 2668 ACATCATACAGCTTCTTGTAGTCGAA--GA-CACCGT---CCTCCACAAACTTAGGTAAA 2615 Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTC 145683 || | |||||||| || || || ||| ||| | ||||| || | || | | | ||| Sbjct 2614 GCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGACG-TATACTCCATTACCTC 2556 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 |||||| || || || ||| || || ||||| ||||| || || | |||| Sbjct 2555 ACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGC 2496 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACG 145803 |||||||| ||||||| | || |||| ||||| | ||||| || ||||| | Sbjct 2495 TGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGCGCATC-----TAAAATG 2441 Query 145804 GTGCA----AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 || | || | ||||||| | || | ||| ||||| | |||||| || Sbjct 2440 CTGAACCATAGCTGCTGCGCATTAATTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTT 2381 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 || ||| ||| ||| || || |||| ||| | || | ||| | ||| ||| Sbjct 2380 TCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCGTTCGGA 2321 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | | ||| ||| || || | || || | |||||||| ||| || | ||| Sbjct 2320 CAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCAT 2261 Query 145979 AGCGCGTACATCAAGTCGCGCGCT--TTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT 146036 || ||||| | ||||| |||||| |||||| ||| ||| |||| || | Sbjct 2260 AGAGCGTAGAATAAGTCACGCGCTCGGTGCAAT--TCATTACCGTGGTTTTTACGCAGGT 2203 Query 146037 TAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTT 146095 || | ||| | | | ||| || |||||||| || | || | || | || |||||| Sbjct 2202 CTAG-AAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTG 2144 Query 146096 CGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||||| ||||| |||||||||| || || ||| |||||| || || | |||||| Sbjct 2143 CGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATGGG 2085 >seq3454 Length=44902 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | |||| ||||||||||| || || ||||| || | Sbjct 25 CCACCACGCAGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGAC 84 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||||||||| || |||| | |||||||||||| || ||| Sbjct 85 AGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 144 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | | || | | ||| | || || | Sbjct 145 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACC 204 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || || ||||||||||| Sbjct 205 TCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCAT 251 >seq832 Length=21457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| || || | ||| |||||||||||||||||||| || ||| Sbjct 3800 CCACCACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCT 3859 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || || |||| | ||| ||||||||||| || Sbjct 3860 AACGTACGGCCA-TCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGG 3918 Query 131127 GATTCCT 131133 ||||||| Sbjct 3919 GATTCCT 3925 >seq977 Length=24603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | ||| |||||||| || || || ||||| ||| Sbjct 11069 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTG 11010 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCA--CAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || |||||||||||||| | || | ||| |||| | ||| | ||| | |||| Sbjct 11009 TCCTGGATTTTCTGCTTGACATTGTCAATGCAG--TCGGACGGCTCCACGTCCAAAGTAA 10952 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 ||| || || || | ||| || || || |||||||||| Sbjct 10951 TGGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGCATGA 10913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471988839450240