Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq963 205 1e-47 >seq963 Length=117303 Score = 205 bits (226), Expect = 1e-47 Identities = 418/612 (68%), Gaps = 12/612 (2%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| | || |||||||| || || | |||||| || || || | ||| || Sbjct 41408 GTACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGA 41349 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| | | ||| || | ||| || ||||||||||||||||| || || ||| || | | Sbjct 41348 GAAGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGC 41290 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || || ||||| || | ||||| |||| | |||||| || | || Sbjct 41289 CAGAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATG--- 41233 Query 93261 AATTACTGCTGAT---CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTG 93317 | || | | ||| || | ||||||| |||||| ||||| | ||| || | | Sbjct 41232 ACACACGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 41173 Query 93318 TTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTA-TGTATGTATCGATT 93376 | || ||||| | || | |||| ||| | | || || || | |||||||| || Sbjct 41172 TATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCAT-TCTTAATATATGTATCAATA 41114 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| ||||| | || || || | |||||| || |||||||| || ||||| || || Sbjct 41113 AGCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAG 41054 Query 93437 CTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | |||||| | | |||||||| ||| ||| | || ||||||| ||||| || || Sbjct 41053 CGAGCTTCAGGTACTTGCACTTCATTGCTAAAGT-TCATGGCGAGATTCTCATTCACAAT 40995 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| ||||||||||| || | | |||||| |||||||| |||| || | Sbjct 40994 GCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT 40935 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 ||| | | |||||| ||||| | | |||| |||||| | ||||| ||||| Sbjct 40934 AAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGA 40875 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || || ||||| |||||||| | ||| | ||| | | ||||| ||||| | ||||| Sbjct 40874 AGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAA 40815 Query 93676 ACGATTAGGGTT 93687 |||||| ||||| Sbjct 40814 ACGATTCGGGTT 40803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556832532353640