Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq977 114 1e-20 seq3454 102 7e-17 >seq977 Length=24603 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || | ||| | || ||||| | || Sbjct 10915 ATGCAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCGTCC 10974 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || |||| || ||||| || |||||||| ||||||||||| || || Sbjct 10975 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGACCAG 11034 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | || ||| ||| || | || || ||||| Sbjct 11035 CAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACACTTTCGGACTACAAT 11094 Query 22399 ATTCAAAA 22406 ||||| || Sbjct 11095 ATTCAGAA 11102 >seq3454 Length=44902 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || ||| |||| || || |||||| | Sbjct 254 AAGATGCAGATTTTTGTCAAGACACTGACGGGCAAGACGATCACGCTGGAGGTGGAATCG 195 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | ||| | | || ||||| |||||||||||||| || || || || || Sbjct 194 TCTGATTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCGCCTGAC 135 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||| ||||| ||| | || || || || | || || ||| Sbjct 134 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTAC 75 Query 22396 AACATTCAAAAAGAATCCACCATACA 22421 || || || || || || || |||| Sbjct 74 AATATCCAGAAGGAGTCGACGCTACA 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419707226218465