Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3723 165 2e-35 seq642 102 2e-16 >seq3723 Length=25211 Score = 165 bits (182), Expect = 2e-35 Identities = 657/1012 (65%), Gaps = 43/1012 (4%) Strand=Plus/Plus Query 279363 TGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATC 279422 || || |||||||| || |||||||| | ||||||| | ||| | | || || | | Sbjct 3133 TGCGAGTTCTCGCTTGCCTATGGTGGTATGATTCTGTTGAACAATGCTCGTCTTCGCCTA 3192 Query 279423 AAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATG 279482 |||||||| |||| || ||||| ||||| || || |||||| || | ||| Sbjct 3193 AAGCGTGGTCACCGTTACGGTCTGTGTGGTCCTAACGGTTGTGGTAAGTCGACGTTGATG 3252 Query 279483 CGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAAC-GCATCTGAGGTAAGGACAGT 279541 ||||||||| | ||||| |||||||| || || |||| | || | ||| | | ||| || Sbjct 3253 CGCGCCATTTCCAACGGCCAGCTGGAGGGCTTCCCTAGCCGCGAC-GAGCTGAAGACTGT 3311 Query 279542 GTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTAAC 279601 || ||| |||||| || | | | ||| | || | ||| | ||||| | Sbjct 3312 GTTTGTGGAGCACAACCTGCAGGCTTCTGAGGCTGAGCTGTCCGTGGTGGACTTTAT--- 3368 Query 279602 GTCT-GACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGG 279660 ||| | || ||| | || | | || | | |||| || | | || | | Sbjct 3369 -TCTAGTGGATGAGGATCTGAAGAACACTCCGCGCAAGGAGGTCGAGGACACTCTTGCCG 3427 Query 279661 CCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGG 279719 ||| ||| | || |||| || | || ||| |||| || ||||||||| Sbjct 3428 GTG-TGGGTTTCACCCCTGACATGCAAGCTCAGGGCGTTGGTACTCTTTCCGGTGGTTGG 3486 Query 279720 AAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGAT 279779 |||||||| ||| || | || ||||| || | | || || || | |||||||| Sbjct 3487 AAGATGAAATTGGAGCTGGCCCGTGCCATGCTGCAGAAGGCAGACATCTTGTTGCTTGAT 3546 Query 279780 GAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGT 279839 ||||| || ||||| ||||| || ||||| || ||||| | |||||| || || Sbjct 3547 GAGCCGACGAACCATTTGGACGTCAAGAACGTCGCGTGGCTGGAAAACTACCTGACGGGT 3606 Query 279840 CTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGC 279899 |||| ||||| | || | || || || ||||||||||||||||| || | || ||| Sbjct 3607 CTGACAAATGTAACGTCGATTATGGTGTCGCACGACTCTGGCTTCCTTGACACGGTCTGC 3666 Query 279900 TCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956 | ||| |||||||| ||| | || |||||| ||| |||| ||||| || Sbjct 3667 ACAAACATTATTCACTACGAGACCCGCAAGCTGAAGATCTACAAG------GGCAATCTT 3720 Query 279957 TCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACC 280016 || ||| |||| || || ||||| |||||||| || ||| || | || Sbjct 3721 TCCCGTTTTGTGGAGCAGAAGCCGGAGGCCAAGGCCTACTACGAGCTGGAGTCGGACAAT 3780 Query 280017 GCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAAGGATCGCGC 280075 | |||| ||||| ||||| || || || | | ||| | | ||| || || | Sbjct 3781 GTGAAGTTTACGTTCCCGGAGCCTGGCTTCCTTGCTGATATCAAGAACAAGGGTAAGC-C 3839 Query 280076 AATCATGAAGCT-CCGTGGCGTCTCCTTTGCTTATCCCAATGG---CCCCAA--CATC-T 280128 ||||| || || | | ||| | ||||| ||| |||||| | || Sbjct 3840 CATCATTCGTCTGACGAAGTG-CTCGTACCAGTATCC---TGGAACCCCCAAGCCGTCGA 3895 Query 280129 TCAGCAGTGTCAACTCG--CAGGT---TTCTATGAACTCACGGATTGGTGTCATTGGACC 280183 ||| || || |||| | || ||| | | | || |||| ||| ||||||| Sbjct 3896 TCAACA---ACATCTCGGTGACGTGCGCTCTGTCTAGT--CGTATTGCTGTACTTGGACC 3950 Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||| ||||| ||||| || || || || || | |||||||| ||| || | || || Sbjct 3951 CAACGGTGCCGGTAAATCGACGCTGATTAAGATGCTGACTGGTGAGGTTGAGCCGAC-GA 4009 Query 280244 GGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 | || | || ||||||||||| |||||| | || ||||| |||||||||||||||| Sbjct 4010 GTGGACAGGTGTGGAAGCATCCTTCCATGCGTTTTGCCTACGTGGCTCAGCACGCTTTCC 4069 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||| ||| || || ||| ||| | || || || ||||||||||| Sbjct 4070 ACCACATTGAGTCGCATCTCGACGAGACAGCCAATCAGTATATTCAGTGGCG 4121 >seq642 Length=28218 Score = 102 bits (112), Expect = 2e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 |||||||| || | |||| || || || ||| |||| ||||||||||| || || Sbjct 15675 AAGGTCGCACAACTGGCTGGCTACGTGTCAGAACACTCTGCGTACCATCACGGCGAACAA 15616 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || ||||||||||| | || || || |||||||| || Sbjct 15615 AGTTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTCGTCGGAAGCAACAACATTCAC 15556 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| |||| ||||||||||||| | ||| || ||||||| |||||| Sbjct 15555 CTTCTGTCGCCCATCGGTCAGTTTGGTACGCGTTTAATGGGTGGCAAGGAT 15505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027783320045301