Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3454 149 1e-30 seq3723 138 2e-27 seq977 102 2e-16 seq832 86.0 1e-11 >seq3454 Length=44902 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||||||||| ||||| || ||||| || || || || Sbjct 25 CCACCACGCAGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGAC 84 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || || || | || ||||| || || Sbjct 85 AGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 144 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||||||||||||| ||| ||| || || | || | ||||| || Sbjct 145 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACC 204 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || ||||| || |||||||| || |||||||| Sbjct 205 TCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCAT 251 >seq3723 Length=25211 Score = 138 bits (152), Expect = 2e-27 Identities = 433/662 (65%), Gaps = 24/662 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| || ||||| |||| ||| ||| || || |||||| ||||||||||| Sbjct 4121 CGCCACTGAATATACTGATTGGCTGTCTCGTCGAGATGCGACTCAATGTGGTGGAAAGCG 4062 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| |||||||||||||| || | ||||| Sbjct 4061 TGCTGAGCCACGTAGGCAAAACGCATGGAAGGATGCTTCCACACCTGTCCACTCGTCGGC 4002 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||| || ||||| | || || ||||| ||||| |||| Sbjct 4001 TCAACCTCACCAGTCAGCATCTTAATCAGCGTCGATTTACCGGCACCGTTGGGTCCAAGT 3942 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCTGAAGATCTCAGGG 225217 || |||| || |||| || || | |||| | |||| | | || ||| Sbjct 3941 ACAGCAATACGACTAGACAGAGCGCACGTCACCGAGATGTTGTTGATCGACGGCTTGGGG 3882 Query 225218 ---CCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 |||| | |||| | || ||| | ||| ||||||| ||||| Sbjct 3881 GTTCCAGGATACTGGTACG---AG--CACTTCGT-CAGACGAATGATGGGCTTACCCTTG 3828 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC--- 225328 | ||| | | ||||| || ||||| |||||| |||| ||| |||| Sbjct 3827 TTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGTAAACTT---CACATTGTCCGAC 3771 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || |||| ||| || || || || Sbjct 3770 TCCAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGCTCCACAAAACGGGAAAGATTGCCC 3711 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | |||||| || ||| |||| |||| ||| | ||| || | |||| Sbjct 3710 TTGTAGATCTTCAGCTTGCGGGTCT---CGTAGTGAATAATGTTTGTGCAGACCGTGTCA 3654 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||||| ||||| || || |||| || || ||||| ||| | |||| Sbjct 3653 AGGAAGCCAGAGTCGTGCGACACCATAATCGACGTTACATTTGTCAGACCCGTCAGGTAG 3594 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| ||||||||| ||||| || || || || || | || | Sbjct 3593 TTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGGTTCGTCGGCTCATCAAGCAACAAG 3534 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || ||||| Sbjct 3533 ATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCCAATTTCATCTTCCAACCACCGGAA 3474 Query 225629 AG 225630 || Sbjct 3473 AG 3472 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||||| ||| | || ||||| ||| ||| || || ||| || | Sbjct 4677 GAATTCGTTGTGGTGAGTAATCATAACCACACCACCGTTGAACTCCTTAATGGCCGAAGC 4618 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || |||||||| || ||||||||| ||||||| |||||||| || | | | ||| Sbjct 4617 AAGAGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATCAAGCACAAGGATGTG 4558 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 ||| | |||||| ||||| | | ||| | |||||||||||||| || || | || Sbjct 4557 CGGGTTCAGCCACATAGCTGCGGCCAGCACAACTTTCACCTTCTGACCACCGGACAAACC 4498 Query 224617 GCGGATCCGCGAGTGAGT 224634 ||| || || ||||| || Sbjct 4497 GCGCATACGTGAGTGGGT 4480 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 |||||||||||||||||||| || | ||| || || | || || ||| || ||| Sbjct 3287 GGGAAGCCCTCCAGCTGGCCGTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCG 3228 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 || ||||| || |||||| | | || ||||| | | || || | ||||| Sbjct 3227 TTAGGACCACACAGACCGTAACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAAC 3168 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 || ||| | |||||||||||||| ||||||||||||| ||| ||||| Sbjct 3167 AGAATCATACCACCATAGGCAAGCGAGAACTCGCAATTGCAAAGGTC 3121 >seq977 Length=24603 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || || || || || || ||||| | |||||||| | |||||| || || || || Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| ||||| |||||||| ||||||||||| || || || |||||| || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| ||| | | || || ||||| || ||||| || || || | ||||| || || Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 10922 ATCTGCATGAT 10912 >seq832 Length=21457 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| || |||||| | || || |||| || ||||| ||||| Sbjct 4003 CCTTCCTTGTCCTGAATTTTCTGCTTGACAGTGTCAATACTGTCCGCCGATTCCACTTCG 4062 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || ||||| ||||||||||| || ||||||||| Sbjct 4063 AGCGTAATGGTCTTGCCCGTAAGGGTCTTGACAAAAATCTGCATT 4107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921575616142920