Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq963 150 3e-31 seq3725 132 9e-26 >seq963 Length=117303 Score = 150 bits (166), Expect = 3e-31 Identities = 483/734 (66%), Gaps = 33/734 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || || ||| ||| ||||| || |||||||| || |||| | || | Sbjct 40968 CTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTTAGC 41027 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || ||||| |||| | || || |||||||| ||||| || || || || || ||||| Sbjct 41028 AATGAAGTGCAAGTACCT-GAAGCTCGCTGCTTTTACGGTTTTCAAATTGCTATCGAGAA 41086 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGA 42598 | ||||| ||||| || | |||||| | | || || || | || | || || Sbjct 41087 TATTCACTCGGAGGTCTATTC---ACTGCTTATTGATACATATATTAAGAATGCTGTAGA 41143 Query 42599 GCGTAACGGGCTGTTCAAG---GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | | || | || || || ||||| || || |||||||||| || | Sbjct 41144 G---AAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAA 41200 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| ||||| ||| | || |||| || ||| || || | || | || Sbjct 41201 TTGGGCACTCAAGTGGT--GTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCG 41258 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 ||| | | || || ||||| |||||||| ||| ||||| ||| ||||| ||||||||| Sbjct 41259 TTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAG 41318 Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | | | ||| |||||| || || | |||||||||||| || || || | || || || Sbjct 41319 AA-ACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGG 41377 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA---GCCCTC 42889 |||| | ||||||||| || ||| ||| ||||| | || |||| ||| | Sbjct 41378 TATGCACACGGACTTTGCTTGTCTCATGTACTCGA---AACTGGTTAACAAATTGCCAGC 41434 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 || || || | | || || || || ||| || ||| | ||||| | Sbjct 41435 GA---GTCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCG 41491 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | ||||| || || || | ||||||||| | |||||||| ||||||| | Sbjct 41492 TGACTCGCTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGA 41551 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--G 43067 || ||| || |||| ||| || | | ||||| | ||| | | || ||| | Sbjct 41552 GTTCGTGGCTGACCGTCTGCTATACTCACTGGGTGT-TGCC-AAGATTTATCATGCCAAG 41609 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 || ||||||| ||||| | |||||| | | ||||||||||||||||||||||| Sbjct 41610 AATCCATTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAA 41669 Query 43128 CGCGTCGCCGACTA 43141 || || | ||| || Sbjct 41670 CGTGTGGGCGAGTA 41683 >seq3725 Length=16789 Score = 132 bits (146), Expect = 9e-26 Identities = 696/1098 (63%), Gaps = 36/1098 (3%) Strand=Plus/Minus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||| | ||||||| | | ||||| || | ||||| || || | ||| | ||| Sbjct 3188 CAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGA 3129 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 || |||||||||| ||| |||| || || ||||| || || ||||| ||||| Sbjct 3128 CGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCAT 3069 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCG 244258 || | ||| |||| | ||| | | ||||||| | | || || | | || Sbjct 3068 AGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCA--CGTTCTCCTTCAAGGCG 3011 Query 244259 TTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGC 244318 |||||||||| | || ||||| | | ||| ||||||||||| ||||| | Sbjct 3010 GTCCAGTCCCAAAGACC--AGAGGACGGGG----TGACACCCCACATGTCGAACTGGAAG 2957 Query 244319 AGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGC 244378 | ||||||||| | ||| ||||| | ||| ||| || || | ||| | | Sbjct 2956 ATACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATC 2897 Query 244379 TT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | | | | || || | | || || ||||||||||| || || ||||||||| || Sbjct 2896 TCCATGGATGTC-TCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTC 2838 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 || |||| ||| ||| | | ||| | ||||| | |||||||| ||||| Sbjct 2837 ACGAGCCTGCTCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTG 2778 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTA 244557 || || ||||| | || | ||| ||| ||||||| || || | || ||||| Sbjct 2777 AACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTA 2718 Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAG 244617 ||||| |||| || |||||||| ||||| ||||||| || | ||| | Sbjct 2717 GTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCAC--------CTTCGTCA-- 2668 Query 244618 CAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGA 244676 || | | || | || |||| ||| || | ||||| ||||||| | Sbjct 2667 CATCATACAGC--TTCTTGTAG------TCGAAGACACCG-TCCTCCACAAACTTAGGTA 2617 Query 244677 GGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCT 244736 || || |||| |||||| ||||||||||| |||| || |||| | | || Sbjct 2616 AAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCT 2557 Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796 | ||| | ||||||| | ||| ||||| || | ||| || |||||||| |||| Sbjct 2556 CACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGG 2497 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856 |||||||| ||||||| || ||| | || ||||| | ||| || | | | |||| Sbjct 2496 CTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGA 2437 Query 244857 TCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGT 244916 ||| || | | || || | ||| ||||||| ||||| ||||| | Sbjct 2436 ACCATAGCTGCTGCGCATTAATTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTTTCAT 2377 Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGC-ACGACGCCGGGCA 244974 | || | |||||||||| |||||| ||||| || || || || || ||| || Sbjct 2376 AAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCG--TTCGGACA 2319 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 | | |||||||| ||| | | |||| | ||| || || || || ||||| || Sbjct 2318 GAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAG 2259 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 || | ||| | ||| | | | ||| || || ||| || | ||| || | Sbjct 2258 AGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAG 2199 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 ||| ||||| |||||| | ||||| ||||||| ||| | ||| | || || || || Sbjct 2198 AAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTT 2139 Query 245155 GTTGCCTCCCTGGTCCAC 245172 | || || |||||||| Sbjct 2138 GCCTCCACCTTGGTCCAC 2121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944291262981360