Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3723 138 2e-27 seq963 89.7 1e-12 >seq3723 Length=25211 Score = 138 bits (152), Expect = 2e-27 Identities = 663/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 4146 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 4087 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 4086 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 4027 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | || | | || || |||| |||||| || || Sbjct 4026 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 3967 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCA-- 333551 ||| || ||||| || || | ||| |||| | || | | || | | || Sbjct 3966 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 3909 Query 333552 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 333610 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 3908 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 3850 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 333668 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 3849 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 3790 Query 333669 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 333725 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 3789 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 3735 Query 333726 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 333785 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 3734 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 3678 Query 333786 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 333845 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 3677 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 3618 Query 333846 ACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGG 333905 || | | || ||||||| | ||||||| ||||| || | |||| Sbjct 3617 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 3558 Query 333906 TTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 333965 || |||||||| ||||| | | | | ||| ||| | ||||| ||||| || || | Sbjct 3557 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 3498 Query 333966 AGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 334024 | |||||| ||||| || || |||||||| || || ||| ||| | Sbjct 3497 AATTTCATCTTCCAACCACCGGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 3438 Query 334025 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 334083 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 3437 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 3386 Query 334084 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGA 334142 | |||| || | | ||| ||||| | | | || | || || || | | || Sbjct 3385 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 3327 Query 334143 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGACC 334201 | ||| ||||| | |||| |||| | | ||| | ||||| || || ||||| || Sbjct 3326 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 3268 Query 334202 GTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 334261 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 3267 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 3208 Query 334262 GCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGC 334321 |||| |||||||| || | || | |||||||| ||||| | |||||||| || Sbjct 3207 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 3148 Query 334322 CAGAGAAAATTCACAAT 334338 || || || || |||| Sbjct 3147 AAGCGAGAACTCGCAAT 3131 >seq963 Length=117303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 243552 TCCATGCCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610 ||| || || ||| |||||||||||||| | ||||||| | |||||||| || ||||| | Sbjct 41500 TCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGG 41559 Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 | ||||| | | | | || ||| || || | || | ||||||| || || | Sbjct 41560 CTGACCGTCTGCTATACTCACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCATTCG 41619 Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTG 243730 || ||||| | || ||||| ||||| || || ||||| ||||| || ||||| | | Sbjct 41620 ACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCG 41679 Query 243731 ATTAT--CAACGCCCTGGTGTG 243750 | ||| ||| | |||||||| Sbjct 41680 AGTATTCCAAGG--CTGGTGTG 41699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102822615430350