Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3454 116 4e-21 seq977 98.7 1e-15 >seq3454 Length=44902 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | ||| || || |||| || |||||||| ||||| || Sbjct 60 CTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAA 119 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||| || ||||| || | ||| Sbjct 120 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 178 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || ||||||||| || | |||||| || |||||||| || ||||| | Sbjct 179 TGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGA 238 Query 42196 CAAAGATTTGCATTTT 42211 |||| || ||||| || Sbjct 239 CAAAAATCTGCATCTT 254 >seq977 Length=24603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||||||||| || | || || || | || || |||||||| ||||| || | Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || || |||||||| | ||| | | ||||||||| |||||| || |||| | | | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10986 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | |||| || ||||| || | || ||||| ||||| || | ||||| ||| Sbjct 10985 TCAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACA 10926 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 10925 AAGATCTGCAT 10915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185225160240