Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3725 105 6e-18 seq3454 102 8e-17 seq963 91.5 1e-13 seq977 89.7 5e-13 >seq3725 Length=16789 Score = 105 bits (116), Expect = 6e-18 Identities = 298/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| || ||||| || ||||| ||| || | ||| | ||||||||| ||| | Sbjct 3485 GCGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGT 3426 Query 145818 CA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATG 145875 | | || || ||| || ||||||| | || || || || ||||| |||| Sbjct 3425 GAGTTTACTGAT--CGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATG 3368 Query 145876 AAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTT 145935 ||| | | ||||| || | || |||| || | || || |||||||| | ||| Sbjct 3367 TAAGCACCACGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTT 3308 Query 145936 TTAAAGAGATCCTTGACGTGCTGGGGTATT-TCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | || ||||| || | || || || ||| || |||||||| ||| || Sbjct 3307 TTGTACTTCTCTTTGACATGGTCCGGAATGGTCTTCACCTTT-TGCACAGAACCACGGTC 3249 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | || ||| | ||| || | || || || | || | || || | || | || || Sbjct 3248 GTTCAGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCAT 3189 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| ||| || | | ||||| || || || || || | |||| ||| Sbjct 3188 CAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGA 3129 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| ||||||||| |||||||||||||| || ||||| || |||| ||| |||||||| Sbjct 3128 CGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCAT 3069 Query 146175 GTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| ||||||||||| | | |||||| Sbjct 3068 AGGAGCCACTAGCAAAGAGTTGCGGATGCCGTG 3036 >seq3454 Length=44902 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| |||| ||| ||||| || || |||||||| || | Sbjct 25 CCACCACGCAGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGAC 84 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || ||||| |||||| |||||||| || || || Sbjct 85 AGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 144 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| || || ||||| | ||||| | | | || | || || Sbjct 145 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGT-CAATCGAATCAGACGATTCCAC 203 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || |||||||||||||| Sbjct 204 CTCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCAT 251 >seq963 Length=117303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | ||| | ||||||| || || || || ||||| ||||| Sbjct 41517 GGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATAC 41576 Query 47471 TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || | |||||||||| || || ||||||||||||| | ||| | | || Sbjct 41577 TCACTGGGTGT-TGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGATATGAT 41635 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 ||||| | ||||||||||||||||||||||| || || ||||| ||| Sbjct 41636 CTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTAT 41684 >seq977 Length=24603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||||||||| || | || || ||| || ||||| || ||||| ||||| Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | || ||||| || || || || || ||||||||| |||||||||||||| | || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | ||| | ||| || || | || | || ||||| |||| ||| || ||||| Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 10922 ATCTGCATG 10914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475476662390640